Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01869 ATGACAAATATGATTACTAGGAGCAATTATGAGGGAGAACAAGAGGAAAAGGATAAAGAAATCAAGGATCTTTTCCAAATAGAAAGAAAAAGGAAAAGAAACGAGAGAAACTCTGCTAAAATACCTTTATCAGTCATGAATGTCATGATTGAGTTTAAAGTTGCTGCTAAGGAGGATTGCGATCTTAACAGACAGGAAAAACCTGCCATTAATAAACTTAAGAAATTGTCTCTTTTTACCGACGTCCTTTCAGAGAAACAACAAGAGTTTTTAGATAATGGATTGCTAACTGTATTAAAGAATTGGCTTGAACCACTTCCCGATGGAAGCTTGCCAAATCTAACTATACGCACAAAAGTTTTGAAGATTTTGAATGATATGGACCTAGAGCACCATGATAAAAGGGAACATCTAAAGAATAGTGGCATTGGAAATGCAGTCATGTTTTTATCACAATCCGATGAAGAAATTAATTCAAACAGAAAACTAGCCAATGAACTAATTTACAAGTGGTGTCGATCCTTATATCATAATAAAAATACAATTTCGTTTAAAAGATCAGAAGCTAAAACACAAGTGACTAAAACACAAGTGAAGAGTCCTCTCTCAGTTCAGCAACTTCAGCAACGCATAAATAAAAAATGGCAGAAGTTGAAGACATCTAGAAAGGAGCAGTTTCAACATGCAAGACCCATGATAAATAATACTTAA 711 0.3404 MTNMITRSNYEGEQEEKDKEIKDLFQIERKRKRNERNSAKIPLSVMNVMIEFKVAAKEDCDLNRQEKPAINKLKKLSLFTDVLSEKQQEFLDNGLLTVLKNWLEPLPDGSLPNLTIRTKVLKILNDMDLEHHDKREHLKNSGIGNAVMFLSQSDEEINSNRKLANELIYKWCRSLYHNKNTISFKRSEAKTQVTKTQVKSPLSVQQLQQRINKKWQKLKTSRKEQFQHARPMINNT 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01869 236 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 39 181 IPR035441 -
Vian7g01869 236 ProSiteProfiles TFIIS N-terminal domain profile. 97 178 IPR017923 -
Vian7g01869 236 PANTHER PROTEIN IWS1 HOMOLOG 1 10 203 IPR044204 GO:0009742|GO:0032784
Vian7g01869 236 Pfam TFIIS helical bundle-like domain 122 172 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01869 Vian-Chr7 29579096 29580536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vian7g01869 Med26 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01869 K17498 - sspl:121772563 218.779