Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01823 ATGGAATCCCGTGATGAAGACGAGGCTGCGAAACTACTGAGGGCTCAAACACACATATGGAATCATATTTTTAACTTCATAAACTCCATGTCCCTTAAATGTGTTGTTGAGTTAGGGATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCTAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCACTTCATCCCTCGCTTGATGCGAATCTTGGTCCATTCTGGCTTCTTCTCTCAACTCAATCACACCGACAACGAGCTTGAAGTCAAGTATGCACTCACTGATGCCTCTTTGCTTCTGCTTAAGAGCCATGAAATGAGTGTGGCACCTTTCCTGCTGGCCATGCTTGATCCAGTTTTAACAAACCCATGGCATCACTTTTCTAATTGGTTCAAAAATGCACCCTCCTACGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTGGCTTCGAAGGTTTTCAATTTGGGGTGA 612 0.4428 MESRDEDEAAKLLRAQTHIWNHIFNFINSMSLKCVVELGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRILVHSGFFSQLNHTDNELEVKYALTDASLLLLKSHEMSVAPFLLAMLDPVLTNPWHHFSNWFKNAPSYAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLASKVFNLG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01823 203 SUPERFAMILY "Winged helix" DNA-binding domain 11 110 IPR036390 -
Vian7g01823 203 Gene3D - 1 106 IPR036388 -
Vian7g01823 203 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vian7g01823 203 SUPERFAMILY RING/U-box 143 198 - -
Vian7g01823 203 PANTHER O-METHYLTRANSFERASE 13 157 IPR016461 GO:0008168
Vian7g01823 203 Pfam RING-like zinc finger 164 191 IPR001841 -
Vian7g01823 203 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 203 IPR016461 GO:0008168
Vian7g01823 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 199 IPR013083 -
Vian7g01823 203 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01823 Vian-Chr7 28663478 28666465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01823 145 197 C3H Transcription Factor Family AT3G60080 45.902 3.54e-12 62.4