Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01803 ATGCAGTTTTTGTATTTTCCCAAAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCAGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTAAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACTATTGCATACTCCTCCACTAAAACCATTGCTTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 744 0.4288 MQFLYFPKDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKLLHTPPLKPLLSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01803 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 184 - -
Vian7g01803 247 MobiDBLite consensus disorder prediction 179 201 - -
Vian7g01803 247 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Vian7g01803 247 MobiDBLite consensus disorder prediction 186 201 - -
Vian7g01803 247 MobiDBLite consensus disorder prediction 218 247 - -
Vian7g01803 247 Coils Coil 125 152 - -
Vian7g01803 247 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01803 Vian-Chr7 28435906 28436749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01803 27 159 AS2 family AT2G30340 79.104 9.40e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian7g01803 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01803 - - ccaj:109795340 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01803 7 28435906 28436749 Vian7g01803 7 28435906 28436749 ECH