LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g01800	ATGTCTTCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGTAAAGGAACGTTTGGAAAGGTTTACTATGGCCGTAGTACAATAACTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTTCTTTGTTATGGAATATGCTAAAGGTGGAGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTATTCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATCTGAAGATCTCAGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGATGGTTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATCTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACTTTCCTTTTCAAGATCCTAATTTGATGGTGATGTATAAGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGTTCCCAAGAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATTGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAACGGTAAACAGACAACACAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACACAACATTCTGAACAATATGGTGATGGAAGTAATGGCTTAGCAGCAGAAGAAAGGCAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTCTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCTTTCAAAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGCAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTGGAGAGCCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAAATCTTTGAGGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAGTAA	1338	0.3991	MSSRENKSNILMQKYELGRLLGKGTFGKVYYGRSTITNQSVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIFFVMEYAKGGELFKKVAKGKLKEDVAHKYFIQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYFPFQDPNLMVMYKKISKAEFTCPRWFPRGVRRLLSKMLDPNPNTRISIDEIKQCSWFRKWPNGKQTTQGENRSVSPSITQHSEQYGDGSNGLAAEERQESVVPVSINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASLIIFRLQEIANRLKMKIKKRAAGLLKLESLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g01800	445	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian7g01800	445	FunFam	Non-specific serine/threonine protein kinase	6	94	-	-
	Vian7g01800	445	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Vian7g01800	445	CDD	STKc_SnRK3	14	268	-	-
	Vian7g01800	445	ProSiteProfiles	NAF domain profile.	313	337	IPR018451	GO:0007165
	Vian7g01800	445	FunFam	Non-specific serine/threonine protein kinase	313	437	-	-
	Vian7g01800	445	Gene3D	Kinase associated domain 1, KA1	318	438	-	-
	Vian7g01800	445	Gene3D	Transferase(Phosphotransferase) domain 1	5	317	-	-
	Vian7g01800	445	Pfam	NAF domain	315	373	IPR004041	GO:0007165
	Vian7g01800	445	FunFam	Non-specific serine/threonine protein kinase	8	310	-	-
	Vian7g01800	445	MobiDBLite	consensus disorder prediction	274	299	-	-
	Vian7g01800	445	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian7g01800	445	MobiDBLite	consensus disorder prediction	274	304	-	-
	Vian7g01800	445	CDD	CIPK_C	319	433	-	-
	Vian7g01800	445	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian7g01800	445	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vian7g01800	445	SUPERFAMILY	Protein kinase-like (PK-like)	11	292	IPR011009	-
	Vian7g01800	445	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	5	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g01800	Vian-Chr7	28410591	28411928	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g01800	5	445	CBL-interacting serine-threonine protein kinases	AT5G58380	65.342	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vian7g01800		Pkinase	2.5e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g01800	-		K07198	gmx:100779316	772.311