Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01784 ATGTCTTGCCAGGGTCACGCGCGGGCCTCTAGCGTGAGGGCGCAGTACGAGGGTTGCCCCCTCTTCCCTCTCTCCCTCCTCCACCACTTCCTCCGCCTCTATGACACCTGCCTAGCCGACCCCGCTGCCAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCACCAAGGGGCTGTTGCAGCTGTGATGTGATTAAGATTAATATTCAATGCTTAGTGCAAGGGGATGTGGTGTTGGAATGCGTGCATTTGGATTTGGATTCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTGAATACAGCATTCATTCAGTCAAACATTTTGATGTTGAATGCTGAGAACTTGGACATTTTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTGTAG 411 0.5304 MSCQGHARASSVRAQYEGCPLFPLSLLHHFLRLYDTCLADPAASGERKILEMVHREAPRGCCSCDVIKINIQCLVQGDVVLECVHLDLDSEREVMMFRVMLNTAFIQSNILMLNAENLDILWDSKERYPKGFRAEV 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01784 136 SMART PTEN_C2_2 21 136 IPR014020 -
Vian7g01784 136 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 62 136 IPR035892 -
Vian7g01784 136 Gene3D - 45 136 - -
Vian7g01784 136 PANTHER FORMIN-J 63 136 - -
Vian7g01784 136 Pfam C2 domain of PTEN tumour-suppressor protein 65 136 IPR014020 -
Vian7g01784 136 ProSiteProfiles C2 tensin-type domain profile. 1 136 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01784 Vian-Chr7 28019884 28020775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01784 15 60 FH2 protein (formin) Gene Family AT1G31810 38.158 2.11e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01784 - - var:108337750 177.178