Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01769 ATGGACGGAAGCTCAAGTGTTCTCTGTCAAAGTCAAGGGTGTCCCCCTTCTTATGAATACAATGAGGAGTGTATCTGTGTTGCCCCATTGATTGTTCATTATCGGTTGAAAAGTCCAGGTTTTTCAGATTTCCGTGCATATGTTACAGAATTTGAGAGCTTCCTGTCAGATGGTCTTAGTGTGCATACTAATCAGCTGTTCATTGAGCGTTATACGTGGGAAGAAGGGCGATTGAGAATGAACCTGAAGCTTTTTCCAGAATATATTGACAATTCAAGTTCTCGTCAGTTCAATACAAATGAAGTTGTTCGAATTAGAGACATGTTCAGAGAATGGGATATTCCGGACAGTGACCTGTTTGGTCCTTATGAACTCTTGGACTTCGTTCTACTGGATATTTACAGGGAAGCGACTACTCCGTCTTCAAGTTCAGGGATAAGCACAGGTGCACTGGTTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATTCTGAGAGTACGCATGAGAGATTATCGTGCACTTTCCAGACGGCGTAACGCATCAAGGATCTCGATAAGAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCATTGGCCACAAACAATTTTAACGAGTCTGCTCAAATTGGAGAAGGAGGCTATGGGAAGGTTTATAAAGGACGTCTTCCTGATGGCACAGTTGTTGCCATAAAACGTGCACAGGAAGGTTCACTGCAAGGTGAGAGGGAGTTCTCTACAGAAATAGAATTGCTGTCAAGGCTACACCATCGAAACCTTGTGTCTCTCATTGGATACTGTGACGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACTCTAAGGGATCACCTTTCTGCTCATTCAAAAGATGTTTTTAGTTTTTCTCTGAGGTTAAAGATTGCTCTAGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCTATATTCCACCGAGACGTGAAGGCCAGCAATATATTATTGGACTCTAGGTACACGGCAAAAGTTGCTGATTTTGGACTTTCACGTCTTGCCCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACAGTAGTAAAGGGGACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGATAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGGCAGGCCACCAATCTTTCATGGTGAAAATATTATTAGACAGGTTAATATGACATACCAGTCTGGTGGAATATCTCGGGTGGTTGATAAACGTATTGAGTCTTACCCATCTGAATATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTGTTCTATGTTACCCGATTCAGATACCAAGGGAGCTGAATATGTTAAAAGTGATTCTTCTGGTACAATATTCAGTTCAGAACCTTCATCATCTATTATAATGACTCCTTTTATTTCAGGAGATGTCTCAGGGAGTGACCTTGTCAGTGGAAGCATACCAACCATCAAACCAAGATAG 1638 0.4103 MDGSSSVLCQSQGCPPSYEYNEECICVAPLIVHYRLKSPGFSDFRAYVTEFESFLSDGLSVHTNQLFIERYTWEEGRLRMNLKLFPEYIDNSSSRQFNTNEVVRIRDMFREWDIPDSDLFGPYELLDFVLLDIYREATTPSSSSGISTGALVGIILGAIACAVTLSAIVSILILRVRMRDYRALSRRRNASRISIRVEGVRSFDYKEMALATNNFNESAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFSTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDVFSFSLRLKIALGSAKGLLYLHTEANPPIFHRDVKASNILLDSRYTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTGRPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYICSMLPDSDTKGAEYVKSDSSGTIFSSEPSSSIIMTPFISGDVSGSDLVSGSIPTIKPR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01769 545 PANTHER OS01G0750732 PROTEIN 10 506 - -
Vian7g01769 545 FunFam Leucine-rich repeat protein kinase family protein 179 290 - -
Vian7g01769 545 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524
Vian7g01769 545 ProSiteProfiles Protein kinase domain profile. 215 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01769 545 Gene3D Phosphorylase Kinase; domain 1 186 290 - -
Vian7g01769 545 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 291 500 - -
Vian7g01769 545 CDD STKc_IRAK 221 485 - -
Vian7g01769 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Vian7g01769 545 Pfam Protein kinase domain 216 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01769 545 Gene3D Transferase(Phosphotransferase) domain 1 291 504 - -
Vian7g01769 545 SUPERFAMILY Protein kinase-like (PK-like) 200 499 IPR011009 -
Vian7g01769 545 SMART serkin_6 215 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01769 Vian-Chr7 27728562 27732443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01769 4 497 Receptor kinase-like Gene Family AT5G01950 56.886 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian7g01769 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01769 - - gmx:100777308 932.169