Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01766 ATGGATGGTCTGGGGGGTATAATTGAGTTGTTAGACGATGGGTTGTCTATGGGTGTAACTAAGATGCGTGAAGAGCTCAATCTTGGAAGAGCTCGACTGAAAGAGCTCATTCTTGGAGAGCTTGATCTTGAAGGAACTTGGTTGAAGGAGCTCAAAGAGCTTGAGCAATTCGACCTAGGTGACCTCGACTTAGGGGAGTTTGGCTTGGAGGAGCTCAGTCTCAAGGAACTCGGCTTGGAGGAGCTTGACCTAACAGAAGCTCGCCCTAGAATAGTTGATATCCACGGGAATTTTGAATATCAAATTCCCACTTACTACTTCCCTCCTAAAGAAGGTCTATTCACTCCACTGGTTTCGCAGATGAGAAAGGGTGGCACAATCAACACTTATGAAGAGGCCAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACAAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACCGAAACCAAAGAAGTCAAATGGTGAAGTGGAACCTAGGCAATCTTCTCGTGTGCGGAACCCAGTTCCTTCGTACAGAGAAGATGTGAGTATACACCTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCATATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTACAGGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACTGTGTGTGACATGATTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAACCATCGAGATTTAAGATTTATATTGTAAGAGCATATCCAAATTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGGAGAAGGAAATATGCATGCAACTAAAGTACGGAAAGCAAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAAACGGGCAGCCTCATGTGATACTAATGAATCAGAGAGTTCTCAGGAGCATATCGACAAAAAAGTCAAGCCACAAGATTTGAAAGGGAAAGTGCAATTGAAAACTGAAAAACCCGTGGTGTCTCTAGTGCTGTCAAAGAAGACAAAAGTCAAAGGGTATTAA 1326 0.4155 MDGLGGIIELLDDGLSMGVTKMREELNLGRARLKELILGELDLEGTWLKELKELEQFDLGDLDLGEFGLEELSLKELGLEELDLTEARPRIVDIHGNFEYQIPTYYFPPKEGLFTPLVSQMRKGGTINTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKSGHHVHKPKPKKSNGEVEPRQSSRVRNPVPSYREDVSIHLPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSYPSFIKSMLWSHVYRGFWLGLPSKFCEEHFPKTVCDMILEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIYIVRAYPNLVEEKGNDILVGEGNMHATKVRKAKCNLESESKTKKPKRAASCDTNESESSQEHIDKKVKPQDLKGKVQLKTEKPVVSLVLSKKTKVKGY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01766 441 CDD B3_DNA 256 347 IPR003340 GO:0003677
Vian7g01766 441 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 162 348 IPR044837 -
Vian7g01766 441 Gene3D - 232 349 IPR015300 -
Vian7g01766 441 MobiDBLite consensus disorder prediction 378 418 - -
Vian7g01766 441 SMART B3_2 258 349 IPR003340 GO:0003677
Vian7g01766 441 MobiDBLite consensus disorder prediction 161 195 - -
Vian7g01766 441 Pfam B3 DNA binding domain 258 346 IPR003340 GO:0003677
Vian7g01766 441 Coils Coil 128 148 - -
Vian7g01766 441 ProSiteProfiles B3 DNA-binding domain profile. 258 349 IPR003340 GO:0003677
Vian7g01766 441 SUPERFAMILY DNA-binding pseudobarrel domain 251 347 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01766 Vian-Chr7 27648272 27654027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01766 130 351 B3 DNA Binding Superfamily AT5G58280 49.801 2.74e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian7g01766 B3 6.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01766 - - vum:124844343 561.607