LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g01761	ATGCTTGCTGCTGCTGCTTCAGCTTCTCGACACCTTCTTCAACGCGATGCCAGCATCGGTGCTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTCTTTTTACAGTTTCTGTGATCGCCACAACCTACCCAAGTCGCACTAAAACATGTTATAGTCATGGTTATGGAATCAGTTTCAATGCCCCTAAACACAGAGCGTGCCCAGGTTTGCTTTTTGCTGTAAAGGGGTTCCTCTCTGATTCATCAAATTCTAATTCTCCACATGGCAGAGTTTCCAGACCTCACTTACCACATCCTAGTTCAAGTGTGGATGGGCGAGCATTGTTCTCAACTTCAGCTAAAGATGATGGAAGCCGAAGCCAAAAGGCTGCTTCTTCCACCATTCCTAAACCACCACCATCACTTCCTAATGGGCAAGTTGCTGATGTGAGGATCCTTCGCACACTTGCCAGTTACCTTTGGATGAAAGATAATCTTGAATTCCGGGTTCGGGTTATTGCCGCATTGGGCTTACTTATTGGGGCTAAGGTTCGTGACCTGGTTTTGAATGTTCAGGTCCCGTTCTTGTTCAAGCTTGCAGTTGATTCGTTGACGACTGCTTCGGGGAATGCTGCTGCTCTTGCTTCGAGTTCAAGTGGGTTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGGTTGGATATGGGATTGCGCGTTCAGGAGCTTCTGCTTTCAACGAATTGCGGACCGCTATATTTTCTAAGGTTGCACTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACGGGTGCATTAAGTAGAATAATTGATCGTGGTAGTCGTGGAATAAATTTCATTCTCTACTCTATGGTGTTCAATGTGGTACCTACCATGATAGAGATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGCTTATTACTTCCTTATCAGTTGCTGCTTATGTTATTTTCACTCTGTCTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAGGGCTGATAATGATGCTAGTACGAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAATTATGACAAGTACCTAAAGAGATATGAAGATGCTGCTCTGAAAACCCAACGAAGTCTTGCTGTCTTGAATTTTGGTCAAAATATTATATTTAGTACTGCTCTTTCATCAGCAATGGTGCTGTGCTCTCATGGGATCATGGATGGAACGCTGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAATTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTCGAGGAAAGAGCAGACGTTAGGGATAAAGAAAATGCACAGCCTCTTAGATATAATGGGGGGAGTATCAAATTTGAGAATGTACATTTTGGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCGTTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTTAATGATACTATATTTCACAACATTCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTCAACAAGCAGCAATTCATAACACTATCATGAATTTTCCTGATAAATACCAAACTGTTGTCGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCTTGGCTCGTTCATTCTTAAAAGCGCCTGCAATTCTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAAATTTTAAGTGCATTAAAGTCCGTAGCAAAAAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATTATTGTTCTGGAAAATGGGAAGGTGATTGAGCAAGGACCACATGAAGAGCTCTTATCAAAACCAGGAAGATATGCACAACTGTGGGGACAACAAAATAACACAATTGATGCAATTGATACAGCCATTGATGTGGGAGCATAA	2253	0.4212	MLAAAASASRHLLQRDASIGACSGSGNRVRSLFTVSVIATTYPSRTKTCYSHGYGISFNAPKHRACPGLLFAVKGFLSDSSNSNSPHGRVSRPHLPHPSSSVDGRALFSTSAKDDGSRSQKAASSTIPKPPPSLPNGQVADVRILRTLASYLWMKDNLEFRVRVIAALGLLIGAKVRDLVLNVQVPFLFKLAVDSLTTASGNAAALASSSSGLALFATPVAVLVGYGIARSGASAFNELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGINFILYSMVFNVVPTMIEISMVAGILAYKFGAPFALITSLSVAAYVIFTLSITQWRTKFRKAMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLAVLNFGQNIIFSTALSSAMVLCSHGIMDGTLTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKENAQPLRYNGGSIKFENVHFGYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAQQAAIHNTIMNFPDKYQTVVGERGLKLSGGEKQRVALARSFLKAPAILLCDEATSALDSTTEAEILSALKSVAKNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEELLSKPGRYAQLWGQQNNTIDAIDTAIDVGA	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g01761	750	FunFam	ABC transporter B family member 25	492	746	-	-
	Vian7g01761	750	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	500	734	IPR003439	GO:0005524
	Vian7g01761	750	CDD	ABCC_ATM1_transporter	500	735	-	-
	Vian7g01761	750	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	147	731	IPR039421	-
	Vian7g01761	750	MobiDBLite	consensus disorder prediction	82	135	-	-
	Vian7g01761	750	MobiDBLite	consensus disorder prediction	103	127	-	-
	Vian7g01761	750	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	489	735	IPR027417	-
	Vian7g01761	750	Gene3D	ABC transporter type 1, transmembrane domain	151	490	IPR036640	GO:0005524\|GO:0016020
	Vian7g01761	750	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	180	466	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vian7g01761	750	SUPERFAMILY	ABC transporter transmembrane region	160	479	IPR036640	GO:0005524\|GO:0016020
	Vian7g01761	750	Pfam	ABC transporter transmembrane region	179	453	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vian7g01761	750	ProSitePatterns	ABC transporters family signature.	637	651	IPR017871	GO:0005524\|GO:0016887
	Vian7g01761	750	FunFam	ATP-binding cassette sub-family B member 7	136	488	-	-
	Vian7g01761	750	Gene3D	-	491	746	IPR027417	-
	Vian7g01761	750	SMART	AAA_5	525	711	IPR003593	GO:0016887
	Vian7g01761	750	CDD	ABC_6TM_ATM1_ABCB7	167	474	-	-
	Vian7g01761	750	Pfam	ABC transporter	516	665	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g01761	Vian-Chr7	27564962	27585460	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g01761	336	736	Calmodulin-binding Proteins	AT2G36910	36.650	4.27e-65	233

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g01761	K05662		-	gmx:100779975	1285.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian7g01761	7	27564962	27585460	Vian7g01761	7	27564962	27585460	ECH