Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01696 ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAAGATAAGAAACTTATCAGCTTCATTCTCACCAATGGCCAATATTGCTGGAGAGCTGTCCCTAAGCTTGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACGAATTACCTTAGACCAGACTTAAAGAGAGGCCTTCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTCGGCAATAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTATCACACACAAACCACTCCCTAATGCAAATCAACAAACCCAAAATCATCCCCAACAAGAACAACAACAACAACAACTACACCAACCACCTGAAGAAGAGCAAAATTACCAACAACCTTTGCAAATTGACTTTGACACCGAGGTTGACCCTAACAAGGAGCTAGAGATTTCAGTTGAATCATCAAATGTCAGTGAAGGCAAAGAGGAAGAGCAAATCATGGCAACACCTCAATTTGAGACAATGGATCAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCAGCCACCTCTACATCTTCTTCAAATTCAACCAACATCCTTGAAGACCTGCAGCTACCTGATTTTGAATGGTTTTGTGATTACATTGATAGTAGTCTTAGTAATAACAATAACAACCATGAAGACAAGAACACCAATAATAGCAGTGTGGCTTTGTGGGATGATGATGACGACTTTATTAGCAAACTTAATTGGCTGATCTCTGAAGACGATGACTGTGATGGTCCTCTCACTCAATTCTCAAGAACTGTCACGGATTCATGGGCTTTTGGCTTGTTTTGA 978 0.4121 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQYCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNANQQTQNHPQQEQQQQQLHQPPEEEQNYQQPLQIDFDTEVDPNKELEISVESSNVSEGKEEEQIMATPQFETMDQLMNGFCTDEVPIIEPNEILMPCAPSSSATSTSSSNSTNILEDLQLPDFEWFCDYIDSSLSNNNNNHEDKNTNNSSVALWDDDDDFISKLNWLISEDDDCDGPLTQFSRTVTDSWAFGLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01696 325 SMART sant 66 114 IPR001005 -
Vian7g01696 325 SMART sant 13 63 IPR001005 -
Vian7g01696 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian7g01696 325 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vian7g01696 325 PANTHER F14D16.11-RELATED 1 278 - -
Vian7g01696 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian7g01696 325 CDD SANT 16 61 IPR001005 -
Vian7g01696 325 Gene3D - 70 156 - -
Vian7g01696 325 FunFam MYB-related transcription factor 70 130 - -
Vian7g01696 325 Gene3D - 11 67 - -
Vian7g01696 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian7g01696 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian7g01696 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian7g01696 325 MobiDBLite consensus disorder prediction 128 159 - -
Vian7g01696 325 MobiDBLite consensus disorder prediction 122 159 - -
Vian7g01696 325 CDD SANT 74 112 IPR001005 -
Vian7g01696 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian7g01696 325 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01696 Vian-Chr7 26581983 26583994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01696 1 325 MYB Transcription Factor Family AT5G16600 47.500 3.81e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01696 Myb_DNA-binding 1.5e-12 CL0123