Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01675 ATGGAGGAGGCTCCTCCGGCGGAGGCGGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCGGCTAAACGACCCCGTTCTGAGGGTCCAAGCGGCCAAGGACATCCGCCGCCTCACTAAAACCTCCCACCGCTGCCGCCGCCAACTCCGTCAGGCCGTCACCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCATGAACCCGCCCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCGATAATCAGTTTCCTCAAGTCAGAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACCAACAAACCAATAATCAGTGCTTGTGGCGCGATTCCTCTGCTTGTAAATACTCTTAAAGATGGAAGCCCTCAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAGTTTATCAACACACCCTGAAAACCTGAGCATTATTCTCGAAATAAATGCAATGCCTTTTATAGTTAATCTTCTCAACACCTGTAGAAAATCCTCAAAAATTGCTGAAAAATGTTGTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGTAGAACCGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTCGTGGAAGTTCTTGAAAATGGCACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGAGAATGTGTGAAAGTGATAGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTGACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTCAGAGAGTCTCCATATTCAAGACCTGAAGTCGAACCGGACACTCTTCAGAACATAGTTTGTGACATCATATCACAGATTGATGGAGATGATCAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTAAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACTCCTTCTGATATGCGTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4796 MEEAPPAEAVAVRRALELLRLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVTPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSENPNLREYATASLLTLSVSPTNKPIISACGAIPLLVNTLKDGSPQAKVDAVTALSSLSTHPENLSIILEINAMPFIVNLLNTCRKSSKIAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMRITSCASEVSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01675 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Vian7g01675 366 Pfam Armadillo/beta-catenin-like repeat 82 117 IPR000225 GO:0005515
Vian7g01675 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Vian7g01675 366 SMART arm_5 81 121 IPR000225 GO:0005515
Vian7g01675 366 SMART arm_5 206 247 IPR000225 GO:0005515
Vian7g01675 366 SMART arm_5 122 162 IPR000225 GO:0005515
Vian7g01675 366 SMART arm_5 163 205 IPR000225 GO:0005515
Vian7g01675 366 SMART arm_5 40 79 IPR000225 GO:0005515
Vian7g01675 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Vian7g01675 366 SUPERFAMILY ARM repeat 12 309 IPR016024 -
Vian7g01675 366 FunFam U-box domain-containing protein 4 1 348 - -
Vian7g01675 366 PANTHER U BOX DOMAIN-CONTAINING 11 292 - -
Vian7g01675 366 Gene3D - 2 348 IPR011989 -
Vian7g01675 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Vian7g01675 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01675 Vian-Chr7 26222346 26225328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01675 12 289 U-box Gene Family AT2G23140 34.286 4.67e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01675 - - gmx:100793971 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01675 7 26222346 26225328 Vian7g01675 7 26222346 26225328 ECH
Vian2g02650 2 47304177 47307562 Vian7g01675 7 26222346 26225328 PCT