Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01671 ATGGTGGTTGTTAGTGGAGGGAACACGGTGGTGACTGTTCATGGTAGAGGTGACTTCAGTGCTGGATGTGATGAGGAGAAAGGGCAGCAGAGGGAAGCACTAGTCGTCGACCACGTAAGGCCTCAAGTGGTGGCCGCGAATGCTAATGAACTTGTCCCAGACGATGTCGTCGGAGGTGAGGCGGTGGTAAAGATTGGAGAGGGCAATGTGTCGTTAAGGATCCTTTTGAGTAAGGGGATGTCTGAGGTGGTGACAACAACTGGAAAGCTCTTCCAGTTCAATACATCAGAGAACAACCCAAATGTTGTTCATCGAAAATCCGAAAACAGGGAGCCTTACAGTGTGTTCATCGAACAACCCATATGCTTTTTCATTTCACCAAAGGACAAAATCTCCCTTCAATCCTTTCATCACCGACAAAAAGCCCCAAGAAAAAAAGAACCTTCTTTTCACAATCTAGCTCCAAACCACTTCAATTCTTCAACAGAGCCTCACTCGACCTTCCATCCCTTCTTTTTCTCTCTCTCATCACAACCTCAACCTCCTACAAAGCTGGACTTCACAAAGAAACAAACTATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCACGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCTGGAAGAACAGACAATGAAGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAATCCATGAATAATAAAGTTCCTATCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCAGCAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTATGATTGGTGCTTTGGAAGACAAGCCTGTACAAAATTCCGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG 1179 0.4377 MVVVSGGNTVVTVHGRGDFSAGCDEEKGQQREALVVDHVRPQVVAANANELVPDDVVGGEAVVKIGEGNVSLRILLSKGMSEVVTTTGKLFQFNTSENNPNVVHRKSENREPYSVFIEQPICFFISPKDKISLQSFHHRQKAPRKKEPSFHNLAPNHFNSSTEPHSTFHPFFFSLSSQPQPPTKLDFTKKQTMRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAADIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEAASTSESMNNKVPIFKSPLAATHHRISFTEQESAIISSPSLNLDLTIALPSSMIGALEDKPVQNSESTKTLDMEIDLNC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01671 392 MobiDBLite consensus disorder prediction 294 320 - -
Vian7g01671 392 SMART sant 204 236 IPR001005 -
Vian7g01671 392 SMART sant 238 286 IPR001005 -
Vian7g01671 392 Pfam Myb-like DNA-binding domain 241 283 IPR001005 -
Vian7g01671 392 Pfam Myb-like DNA-binding domain 205 233 IPR001005 -
Vian7g01671 392 MobiDBLite consensus disorder prediction 135 159 - -
Vian7g01671 392 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 193 329 - -
Vian7g01671 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 233 IPR017930 -
Vian7g01671 392 SUPERFAMILY Homeodomain-like 202 280 IPR009057 -
Vian7g01671 392 MobiDBLite consensus disorder prediction 298 320 - -
Vian7g01671 392 Gene3D - 242 316 - -
Vian7g01671 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 288 IPR017930 -
Vian7g01671 392 Gene3D - 202 236 - -
Vian7g01671 392 FunFam MYB transcription factor 240 301 - -
Vian7g01671 392 CDD SANT 244 284 IPR001005 -
Vian7g01671 392 ProSiteProfiles Myb-like domain profile. 200 284 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01671 Vian-Chr7 26158494 26168055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01671 194 363 MYB Transcription Factor Family AT4G38620 47.317 1.68e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01671 Myb_DNA-binding 8.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01671 K09422 - gmx:100793444 309.686