Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01649 ATGGCTTCCCATTGGTGTTTCCGCTGCAACAAATTTGTCAGAGTATGGAGACAGGAAATGCCCATGTGTCCAGAATGTGACAGTGGATTCGTCGAAGAGATCGATTCTTCCGGTCGCCCCGTCCATGCCGAACCGCGCCGCCGTAGGTTCCCCGCCGCGGCTGCAATGTACATGATCGGCCACCGTTCCGGTAACTCCAACCAAATTCCCCGTTCCTCTCACCATCAACATTGCAGAACCGCCAACGGCGACCCGTCTCCGATCAACCCGGTTATCATGCTCCGCGGAGAGGGATCAAGGCACGAGCGTGGCTCCAGCTTCGACCTTTTCTACGACGATGGCGCCGGTACGGGCCTCCGACCACTCCCTCCGAGGATGTCAGAGTTTCTCCTCGGAACAGGCTTCGACCGCGTGATGGACCAACTTTCCAACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGTCGTGGATGCCATGCCGGAGATTGAGATAAACGCGTCCCATATGGTGACTGAGTCACATTGCGCGGTCTGCAAGGAGCCTTTTGAGCTTTGCACCAGAGCGAGAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTCGCAATTCGGAACTCCTGCCCTGTGTGCCGCAAACAGTTGCCTGTTGAGAACGAACGTGAGGGGTTGGAGCGTGTGGAGGAGGAGGAAGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGCGGAGGGTTTGCAGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACCTTGTTATGGGGGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAACGTTCTTCTAGCTCTGGTTCTTCGAGAAGCGCGACGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTTCTTCATCTACGCGTAGATCTTGGTCAATGGATGTCAACGGTGGAACCAGACCATGGTAA 1143 0.5503 MASHWCFRCNKFVRVWRQEMPMCPECDSGFVEEIDSSGRPVHAEPRRRRFPAAAAMYMIGHRSGNSNQIPRSSHHQHCRTANGDPSPINPVIMLRGEGSRHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSGSGRHDQHHAPASKAVVDAMPEIEINASHMVTESHCAVCKEPFELCTRAREMPCKHLYHPECILPWLAIRNSCPVCRKQLPVENEREGLERVEEEEENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNLVMGEPRRISWSVSESRGRRRGGTFRRMFNGLFSCLRGGGVGPQRSSSSGSSRSATSTSVRASRPNMGPSSSTRRSWSMDVNGGTRPW 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01649 380 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Vian7g01649 380 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vian7g01649 380 MobiDBLite consensus disorder prediction 65 83 - -
Vian7g01649 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 230 - -
Vian7g01649 380 SMART ring_2 185 225 IPR001841 -
Vian7g01649 380 MobiDBLite consensus disorder prediction 333 372 - -
Vian7g01649 380 Pfam Protein of unknown function (DUF1117) 249 356 IPR010543 -
Vian7g01649 380 MobiDBLite consensus disorder prediction 332 380 - -
Vian7g01649 380 SUPERFAMILY RING/U-box 165 231 - -
Vian7g01649 380 Pfam Ring finger domain 184 226 IPR001841 -
Vian7g01649 380 MobiDBLite consensus disorder prediction 65 89 - -
Vian7g01649 380 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Vian7g01649 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01649 Vian-Chr7 25874919 25876061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01649 121 234 C3H Transcription Factor Family AT5G01980 38.596 4.44e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01649 K11982 - gmx:100789228 524.628