Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01639 ATGAAGTCACAGTCACAGCATGAAAAACCAGCAATTATTGGAGATGACAGAAAGAACAATTGGGAAGAAAGGGCTTTTGCAGAAGATGCAGTTGGTAGCATGTGGCCTCCAAGACCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGAGGTCACATGAATATTCACAGAAGGGACAGGGCTAGGCTCAAACAAAACCTTAACCCTCATTACCAAAATTATCACAGAATCAAATCCTTATTAGGTAATAATAATCATCCTTTTTCTTCACCACTCATCTCCACCCAGATCAATTGTGGTCTTACTCATGCTCATAGCTATTCTAGCCAAGCAACTACAATTTCTACGACCAGATCACTCTCATGTATATCCACACAAGAATATAAATTTTCACCTTCCTCTTCTTCTTCATTCATCTTGGGACAAATGGGGTCTCCTAATTCAGAACAAGCAATGGAGTACAGTTTTAAAGGCTTGGAATGTGGTAATTTTGTTGAAACAAGTTTGTCTATGGGTATGACTACCATGTTTGGCCAAAATTCATCACCAAACATCAGTTGCAAGAGACTAAAAAACAACATTTCTTCTCTTCCTATTTTCCTCAGACCATGTTCAAAGGACAAAGGCCTGCCTTTTCAACCTGTGGAAATCTCAGTAGAACTTCATCACGCAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAAGTTGAGTAG 741 0.3995 MKSQSQHEKPAIIGDDRKNNWEERAFAEDAVGSMWPPRPYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLNPHYQNYHRIKSLLGNNNHPFSSPLISTQINCGLTHAHSYSSQATTISTTRSLSCISTQEYKFSPSSSSSFILGQMGSPNSEQAMEYSFKGLECGNFVETSLSMGMTTMFGQNSSPNISCKRLKNNISSLPIFLRPCSKDKGLPFQPVEISVELHHAMEDLDLELRLGKQQVE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01639 246 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Vian7g01639 246 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Vian7g01639 246 SMART c2h2final6 40 62 IPR013087 -
Vian7g01639 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vian7g01639 246 Pfam C2H2-type zinc finger 40 64 - -
Vian7g01639 246 Gene3D Classic Zinc Finger 35 89 - -
Vian7g01639 246 PANTHER OS07G0101800 PROTEIN 16 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01639 Vian-Chr7 25683023 25683763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01639 8 71 C2H2 Transcription Factor Family AT2G37740 68.116 2.57e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian7g01639 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01639 - - vun:114195124 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01267 2 26140433 26141353 Vian7g01639 7 25683023 25683763 ECH
Vian7g01639 7 25683023 25683763 Vian7g01639 7 25683023 25683763 ECH
Vian2g02625 2 46967923 46968785 Vian7g01639 7 25683023 25683763 PCT