Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01597 ATGGAATTGGAAACCCTGTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTCGTGGAAGAGAGCCAAAGCACAGAATGGAGTAGGGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTGGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGATTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGATGCAGAAGAAGACCTGCAGCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTCAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAATTTCGTGGTGACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCATCGGATAAGATCAAGTCTCCGTTCATGATTACACCGCAGCAGAAGCTGAATAGTATGTCAAAAGTGCAGTTGGACTGGACCAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGAGACAACTTGTTTGTGTCGTCTTCATCTGATATCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTACACGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGAATGGCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCATGCACTGTAG 897 0.4448 MELETLYPPCFMPDSNWFVEESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVLDVIKQYRELEEDVIEIEAGRVPIPGYLASSFTFELVHNHNYDGCRRRPAAVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPFMITPQQKLNSMSKVQLDWTSHCNDGSLMVFNPNRDNLFVSSSSDIMALKMQGQDLYDCALHEAYAKVKVPGFGMAPRDFNNEAIFGIHAL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01597 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vian7g01597 298 CDD SANT 26 72 IPR001005 -
Vian7g01597 298 FunFam transcription factor MYB1R1 125 176 - -
Vian7g01597 298 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Vian7g01597 298 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 232 IPR043363 -
Vian7g01597 298 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vian7g01597 298 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vian7g01597 298 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vian7g01597 298 CDD SANT 126 170 IPR001005 -
Vian7g01597 298 Gene3D - 19 86 - -
Vian7g01597 298 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vian7g01597 298 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Vian7g01597 298 Gene3D - 125 176 - -
Vian7g01597 298 FunFam Transcription factor SRM1 19 86 - -
Vian7g01597 298 SMART sant 23 75 IPR001005 -
Vian7g01597 298 SMART sant 123 173 IPR001005 -
Vian7g01597 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01597 Vian-Chr7 25019650 25020682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01597 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01597 - - gmx:778039 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02579 2 46508174 46509302 Vian7g01597 7 25019650 25020682 ECH
Vian2g01006 2 17591809 17593445 Vian7g01597 7 25019650 25020682 ECH
Vian7g01597 7 25019650 25020682 Vian7g01597 7 25019650 25020682 ECH
Vian2g02579 2 46508174 46509302 Vian7g01597 7 25019650 25020682 PCT