Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01584 ATGGCTTCCTCTTACCGTGACCGCACCTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGAAGGAGGGACCTCACCTTCGGTTCAACCCGAGATTGCTTCTTCCACCTCTCACGATTCCTATTCAAGATCTGAATTCAACCGAAAGGCCTCACGAATCGGGTTGGGGATAAATGAAACCTCACAGAAGGTGGCGAGGCTCGCGCAGCTGGCGAGGAGGTCGTCCATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGTGCTGATTAAGAACGAGATCACGGCGCTCAATTCGGCTCTCTCCGATTTGCAAGCCATTCAGAACATGGACATGGCTGATGGAAGTTACTCGCAGGATAGGATTGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGCAAACTTATGGGAGCCACGAAGCATCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCACGAGAGCAGGAAGCAGATTTTTTCCAAGAATGCATCAAGGGAGAACCCTTTCCAGCATCAACCAAAGCCAGCTACTGAGCCGCCTCCTTGGTCAAATTCATCGAATGCATATGACAATCTGCAACAAGAATCGGTATTACCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCAGTGGACAACACTCCAACTCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCGGCAAGAAAACTACACTCAAAGTAGGTCAACTGCTCTGCACAATGTGGAGTCTACCATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCGAATGTTGAAGGAGCTCACAGCTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGAGATCGACAAGGGGACTTAAAGGCGCATTTCACTTTAAAAGGCCACGCACAGGTTCAAGTGCAGGGGAAGCATGCATGGAGTAAAAGTGTGAAACAACTGATTGTGGTGGGATTTCAAGTGGGAATTGACCCTGAACTTGCTGTGTTATGA 1092 0.4789 MASSYRDRTSEFRLLSETLKKIEGGTSPSVQPEIASSTSHDSYSRSEFNRKASRIGLGINETSQKVARLAQLARRSSMFNDPAVEIQELTVLIKNEITALNSALSDLQAIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHESRKQIFSKNASRENPFQHQPKPATEPPPWSNSSNAYDNLQQESVLPSNGAPVSNQLRRRLAVDNTPTQQMEMSMVQQVVPRQENYTQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRDRQGDLKAHFTLKGHAQVQVQGKHAWSKSVKQLIVVGFQVGIDPELAVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01584 363 SMART tSNARE_6 239 306 IPR000727 -
Vian7g01584 363 MobiDBLite consensus disorder prediction 160 196 - -
Vian7g01584 363 CDD SNARE_syntaxin5 248 314 - -
Vian7g01584 363 Gene3D - 41 299 - -
Vian7g01584 363 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Vian7g01584 363 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Vian7g01584 363 MobiDBLite consensus disorder prediction 23 43 - -
Vian7g01584 363 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian7g01584 363 MobiDBLite consensus disorder prediction 23 47 - -
Vian7g01584 363 PANTHER SYNTAXIN 46 313 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01584 Vian-Chr7 24803511 24813084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01584 1 314 SNARE and Associated Proteins AT5G05760 66.456 2.43e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01584 K08490 - gmx:100777383 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01584 7 24803511 24813084 Vian7g01584 7 24803511 24813084 ECH