Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01568 ATGAAGAAGAATAATTCACTCTTCTCCGCGGTTGCCTTCACCCTCTTCACTGTCATCCTCTTAATCCTCTCTTCACTGTCACCCTCCCATGCCATTGGTTCCGCCTCCACTCTCGCCGTCACCTCTGCCGCCGTCTGCGGCGTGGTGGCATCGGAGCCGACACGGCGCATTGCGTGCTACAGCGATGGACACGTCGTCGCCGTTGCTCCCAACATCTCGTTCTCCGCGATCTCCGGCGGTCTGAGCTACTTCTGCGGCCTCCGGTCCGGCAACTACACTCTTCTCTGCTGGGACACCCTTTCGTACTTCCAAAGCAAGAGACTTTACAACAATGGCACTGTTCTATTCGAGAATCTCGCCCTCGGGGACTTCCAGGTTTGCGCCACCGCTGTCGGCGATGGAGCGGTGTCGTGTTGGAGAACCAATGCCGCCTTCGAATTGCCTTCTGGGTCGGACCGGTTTTCTTCTATTTCGTCTGGTTCGGGTTTTTCTTGCGGAATTTTGAAGGGTAGTAATTGGGTTCGGTGTTGGGGGGTTGAGGCCAGAGCGAGAAAAATGGAGAGTGAGTTTGGGAACGTGTCTATGGCGAGTCTTGTGGCTGGGGAGTCACATGTATGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGATTTTGGTCAGATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTCTGGCTCTTGGAGCTGAGCATAGTTGTGCTATTCGGAGATCCAATGGTTCTGTTGTTTGTTGGGGTGGGAGAGGGTTGTTTGAGGTTAATGCTACAAAAGGTGTTTCTTTTGAGGTTCTTGTTTCTGGGTCCAATTTTACTTGTGGATTGACGACTAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGGTTAATACTTCAGGTTATGAAATTCCTTTGCCTCCTATACTTCCAGGGCCTTGCGTTCAATCTTCCTGCAGTGAATGTGGGATATATCCTCAATCCGATTCTCTCTGTTCTGGCTATGGTAACATCTGTAAGCCAAGACCTTGTTGGCCTCCAATGCCAGGGCCAGAACCACCACAAATGGCACCGCCACCTGTGGTGGCGGTGCCACCTGCGTCTCAGTCAAGTGCCTTCACCAAAGGGTTATTGGCATTTGCCATTGTTGGATGCTTGGGAGGTGTTACTGGGATATGCAGTGTGATTTATTGCTTATGGACTGGGGTTTGTTTAGGGAAGAAGAAAATTCACAATTCTGTGCAGCCAACAATCACTAGAGGTGGCAGTGTAAACGGTGGTGGTGGTTCTAGCAATAGTATTAGTCCTCCGTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGACGCCAAAGGAGTGGAACCTCATCAACAAAGCATCCTGAAAGGGCTGAGGAATTCACCTTGGCTGAGCTTGTTGCAGCTACGGATAATTTCTCCCTTGAGAACAAGATTGGTGCTGGAAGCTATGGCGTTGTTTATAGAGGCAAACTTGCAGATGGCCGTGAGGTGGCAATCAAAAGGGGCGAAACAGGTACAAAGATGAAGAAGTTTCAAGAGAAAGAGAGCGCATTCGAGTCAGAATTGGCCTTCTTGTCCCGTTTGCACCACAAGCACTTGGTAAGGCTGGTGGGGTTCTGTGAGGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAAAACAATGTGGACAAGAGTAGCAGTGTCTTGAATTCTTGGCGAATGAGGATCAAAATCGCTCTGGATGCTTCGCGAGGAATTGAGTATCTGCATAACTACGCAGTTCCATCTATAATTCACCGAGACATAAAGTCTTCAAACATTCTCATCGACGCGACTTGGACAGCGAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCTTGATTACCGGCCAACGAAGGCAGCAGGAACAGTAGGATATATTGATCCTGAATATTATGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGAGTGGTACTGCTAGAGCTATTAACAGGAAAGAGAGCAATATTCAAGAATGATGAAAATGGAGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCAGTTATTATGGCAGGAGAATTGGCAAAATTTTTGGACCCAAGGGTTGAACCACCAGAGTTAAATGAGACAGAAGCAGTGGAGCTAGTGGCATATACAGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCATTGGCTCTTTGTGATAGTAGTCATGGCAGCATTTCCAGTGGTACAGTCTCCATTGTATCAGACTGA 2391 0.4797 MKKNNSLFSAVAFTLFTVILLILSSLSPSHAIGSASTLAVTSAAVCGVVASEPTRRIACYSDGHVVAVAPNISFSAISGGLSYFCGLRSGNYTLLCWDTLSYFQSKRLYNNGTVLFENLALGDFQVCATAVGDGAVSCWRTNAAFELPSGSDRFSSISSGSGFSCGILKGSNWVRCWGVEARARKMESEFGNVSMASLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHSCAIRRSNGSVVCWGGRGLFEVNATKGVSFEVLVSGSNFTCGLTTNNFSVICWGPGWVNTSGYEIPLPPILPGPCVQSSCSECGIYPQSDSLCSGYGNICKPRPCWPPMPGPEPPQMAPPPVVAVPPASQSSAFTKGLLAFAIVGCLGGVTGICSVIYCLWTGVCLGKKKIHNSVQPTITRGGSVNGGGGSSNSISPPSRSSTIRRQGSRIMRRQRSGTSSTKHPERAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSLVDFAVPVIMAGELAKFLDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTVSIVSD 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01568 796 SMART serkin_6 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01568 796 SUPERFAMILY Protein kinase-like (PK-like) 465 772 IPR011009 -
Vian7g01568 796 MobiDBLite consensus disorder prediction 421 450 - -
Vian7g01568 796 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Vian7g01568 796 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vian7g01568 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vian7g01568 796 FunFam Serine/threonine-protein kinase-like protein CCR4 568 790 - -
Vian7g01568 796 Gene3D - 61 309 IPR009091 -
Vian7g01568 796 Pfam Protein kinase domain 488 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01568 796 ProSiteProfiles Protein kinase domain profile. 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01568 796 MobiDBLite consensus disorder prediction 421 471 - -
Vian7g01568 796 FunFam serine/threonine-protein kinase-like protein CCR1 456 567 - -
Vian7g01568 796 Gene3D Transferase(Phosphotransferase) domain 1 568 785 - -
Vian7g01568 796 SUPERFAMILY RCC1/BLIP-II 67 302 IPR009091 -
Vian7g01568 796 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 782 IPR044815 GO:0004674
Vian7g01568 796 Gene3D Phosphorylase Kinase; domain 1 448 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01568 Vian-Chr7 24605943 24608333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01568 9 796 Receptor kinase-like Gene Family AT3G55950 60.049 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian7g01568 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01568 - - gmx:100798905 1299.65