Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01566 ATGGCTGTGTCCAACGGCGTCGAAGCAGTGTTAGAGTTTCTGCGGAAGAATGGCTTGTCGGAGGCGGAGTCCGCTCTCCGAGAAGACATCATCGAGAACACCGACCTCGGAAACTTCGACTACGAGAAGTTCTTCTTCCCCATGGTCCCGCCGCCGCCGCCGGTCAGAGTTCGATCCTTCTCCCGACCGTCCGAGTTCGCCGCCGCGGACGACGACGACTCCAAATCCAGCTCGGACGAGTTCGTCACCATCGATTCTTCCACTTCTCGCGTCTCTTCTTCAGAATTCGTAAATCCATATGGAATCCGTTCCTCGTCTCAGACTCAGAATGATTCGGAGTCTTCGTCTGAAAGATTATCTCAGTTTGGCACAGCACGTGATTATCACGATTTTGATATGCAAAATGAACCGTATTGGTATAATGAAAAAGATGAAGACTATTTCATGACTCCTAATTTTGAAGGGCCAGACTATTTTGCGTGTCAGAGTGAAGATAAGTTTGTCATGACAGCAGAAACGGACAACCAACGGGACAATTCTCTGCATCTTGGTTCCAACTATGAAGAATTTCAACTAAAGGGGAATAGTAATGGTGGTTACATGGACAAGGCATGCCTTGATAATCATTTTTCTGTAGTGGATGGAACTGTGGCTCATTCAAAAGGGTATTGTTATGTTGATAACAAGGACCAGTTTAAAGGGGAATTAGAGGGTAAGGCTGAGAAACCCAGTGTTGCCTGCAGTTGTGAAGTTCCATTTTGCAAAAGCAGTCCTGGTTCTGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCGGCTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGGGGGTTGTTGGGGACATTAACTCTTTTGATTCTACTTCAGAGCTAACTTTGAATCAAAGTTTTGACCACTACACTAAAAACGACAGCAGTAAGGAGTACAAGGGTCCTTACGACTTAACTATCGAAGTTACTGATAAAAATCTACCAAATGGACTTGACACCTATAAGGCACAACTTGGTGGAGAATTAACTGAAGACTGTCAAGATCCAGAGCTTGCTGCCGATGGAGAGGATACAACTGATGATGAGCTCTTGAAGTATACTCAAGAGGAAGAATACGAAGTGTTTGATCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTTCCGATTGTGTTAAATACAGTCTTGGCTGGAAGGTATTATTTGACCGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGACCTTCAGACAGGGATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCAGATGAACATCACATTTTGCGCCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATGGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACAGACAATCTGTGCCTATATGTACAGTCCAGATCCTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAGAAGATTGACATATGGTCTCTGGGATGCATTTTGGCGGAGCTATGCTCTGGGGAAGTATTTAAATCAGATTTTCAGTTGGTGCTGTTCCCAAATGATGCAGTTGTGATGATCCTGGCACGCATAATTGGAATGTTTGGTTCTATTAATATGGAAATGTTGGTGAAAGGACAAGAAACGCACAAGTACTTCACCAAAGAATATGATATTTATTACATAAATGAGGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAGTCATCGTTGGAGCAGCACCTGCAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCTGCGTCAACCCTAAAAGAAGGCCTACCGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA 2184 0.4199 MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVRVRSFSRPSEFAAADDDDSKSSSDEFVTIDSSTSRVSSSEFVNPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDEDYFMTPNFEGPDYFACQSEDKFVMTAETDNQRDNSLHLGSNYEEFQLKGNSNGGYMDKACLDNHFSVVDGTVAHSKGYCYVDNKDQFKGELEGKAEKPSVACSCEVPFCKSSPGSGGSCSLDPTNFGYPNLKEIHLNNFHLGVVGDINSFDSTSELTLNQSFDHYTKNDSSKEYKGPYDLTIEVTDKNLPNGLDTYKAQLGGELTEDCQDPELAADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYLTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADEHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVFKSDFQLVLFPNDAVVMILARIIGMFGSINMEMLVKGQETHKYFTKEYDIYYINEETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLCVNPKRRPTARQALKHPWLSYVY 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01566 727 SMART serkin_6 413 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01566 727 Pfam Protein kinase domain 416 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01566 727 SUPERFAMILY Protein kinase-like (PK-like) 402 724 IPR011009 -
Vian7g01566 727 Gene3D Phosphorylase Kinase; domain 1 408 494 - -
Vian7g01566 727 FunFam Putative serine/threonine-protein kinase dyrk2 407 494 - -
Vian7g01566 727 CDD PKc_DYRK_like 413 723 - -
Vian7g01566 727 PANTHER DUAL SPECIFICITY PROTEIN KINASE 108 723 - -
Vian7g01566 727 Gene3D Transferase(Phosphotransferase) domain 1 467 723 - -
Vian7g01566 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vian7g01566 727 ProSiteProfiles Protein kinase domain profile. 413 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01566 727 FunFam Serine/threonine-protein kinase ppk15 492 724 - -
Vian7g01566 727 MobiDBLite consensus disorder prediction 98 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01566 Vian-Chr7 24569186 24574284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01566 410 718 MAP Kinase Gene Family AT5G19010 30.395 1.53e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vian7g01566 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01566 - - gmx:100783988 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01566 7 24569186 24574284 Vian7g01566 7 24569186 24574284 ECH