Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01561 ATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCTCCGAGTCTCGTGATGGAGAATAATATTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTCTCGGCTTTACTTGAACTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCATAGATATCAACGAGGCTGGCTTTTGGTATGGCAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCATTAAGGTTCTCAAGTATATTCTCGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATATGGCCACTGCTCTTCATTGTGCTGCCTCTGGAGGCTCTGAATCTTCACATGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACTGGAAACAGGCCAGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGCTCCTCAGAGGTGGTGAAAGAGATGAACTGGTGAGCCAGGAGATGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCTGATATAAACAACGGTGTGTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCGGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGCGTTCCTTGCCCAGAATTCCGTAAAGGGACCTGCCAGAAGGCTGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCAACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTTCCTGGTAGCAGACTCAAGGCTGCTCTCAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAACAGCAGCAGCAGCAACAGTTGATAGAGGAGATTGCCAGGATCTCTTCTCCGTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATGGCCTGTTAGCCGCTGCTGACCCTTCTGTGTTATCACAACTACATGGACTTTCTGTGCAGCCTTCAACACCCACCCAAACCGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGTTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCGCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2034 0.4912 MCSDSKSKLSSPSLVMENNIQKQNLDCFRNFSALLELSASDDFEAFKREVDEKGIDINEAGFWYGRRIGSKKMGSETRTPLMIASLFGSIKVLKYILEAGTVDVNRACGSDMATALHCAASGGSESSHEIVKLLLDAGADAESLDATGNRPANLIAPAFDSSSKSRRKAMELLLRGGERDELVSQEMELQIFSASLSAKEGSEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPVRQQQQQQQQQLIEEIARISSPSFRNKEFNRIGDLNPTNLDGLLAAADPSVLSQLHGLSVQPSTPTQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGASTHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGDLSKEMLPPWVEQLYIEQEQMVA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01561 677 SMART ANK_2a 76 106 IPR002110 GO:0005515
Vian7g01561 677 SMART ANK_2a 111 143 IPR002110 GO:0005515
Vian7g01561 677 Pfam Ankyrin repeats (3 copies) 69 142 IPR002110 GO:0005515
Vian7g01561 677 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Vian7g01561 677 Gene3D - 29 176 IPR036770 -
Vian7g01561 677 Gene3D - 272 334 - -
Vian7g01561 677 PANTHER UNKEMPT FAMILY MEMBER 36 644 IPR045234 -
Vian7g01561 677 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Vian7g01561 677 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Vian7g01561 677 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Vian7g01561 677 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Vian7g01561 677 SUPERFAMILY Ankyrin repeat 28 165 IPR036770 -
Vian7g01561 677 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01561 Vian-Chr7 24503688 24505721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01561 31 672 C2H2 Transcription Factor Family AT5G12850 40.311 3.99e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian7g01561 Ank_2 1.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01561 - - gmx:100783376 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01561 7 24503688 24505721 Vian7g01561 7 24503688 24505721 ECH