Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01560 ATGACGTTCAAGCGCAGGAATGGAGGTCGCAACAAGCACGGTCGCGGACATGTCAAATTCATTCGTTGCTCCAACTGTGGCAAATGTTGCCCTAAGGACAAGGCAATCAAGAGGTTTCTCGTGAGGAACATTGTTGAGCAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTATGAGCAATACACACTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCGTGTGCTATCCACTCTCATGTTGTTAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGAGCCTCCGCAGCGATTCATCAGACGCAGGGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCACCTCGTCCTCCTGTTGCAGGAGCTCCTTCTTTTCCAGTGTCACCTCTCTCTCTCTTCAACTTCTCTTTCTCTCTCATTCCTCCAAACCCATTCCAATTCTCACTCTCATGGGTTGTTACGTCTCTTGCAAATGACCAATCCACAATCGCAACCTGCGACCCTCACTTTAAGAAGCACAAACCCCTCACTGCCAAACCAATCCGCCACTTGAACTACGCCGAAATCTCCCCCGCCGCTTCTGGCGCTGAGAATATCCGAAAGAAAGAGATTAGAGTATATTCAATATTGATCGTGTTTGTGTTGAGCACAAGAGGTCTTTTCTGGGGTTCCGTCATTCCTTGTGCCCTCTTCTACTTTCTTCAACTCTTCTTCAAAACCAAGACACGTCACTACCAACCACCACCTTCCCACAACCATAAGGAGGATTCCACCACCTTTCGCCGTTCTTTATCTCTCACCGCAAGGCACGCTTCTGCCTCTGCTTACGTCTCCCCTCACGCCAATTCCGTAACCGCTACTAACTCTTCTTTCCATCTTGGTTTCGACAAGGTTGCTGATGATCCCTACCATGAAACTCATAATCCCGATGGAGCTCAAAGTGGTAATTCTTGTTTGTTTCTTTATGGGATGAAGGGATTGTTGATGAAAACGTTGGATGAACAAACAATCTATGTTGATCCTCTAACCCTGCAGGCTGTGGCTGGTTTCATGTGTCAAGTTTTGGAGAGGGAACCAGTGAGTATCGTGAGGTCAACCATTAGAGCTCTATTTGAGGTTCAGAAGGGGTTTTATTTAAGGACGGTGAGGAGTGAGTTGTGA 1170 0.4812 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRPPVAGAPSFPVSPLSLFNFSFSLIPPNPFQFSLSWVVTSLANDQSTIATCDPHFKKHKPLTAKPIRHLNYAEISPAASGAENIRKKEIRVYSILIVFVLSTRGLFWGSVIPCALFYFLQLFFKTKTRHYQPPPSHNHKEDSTTFRRSLSLTARHASASAYVSPHANSVTATNSSFHLGFDKVADDPYHETHNPDGAQSGNSCLFLYGMKGLLMKTLDEQTIYVDPLTLQAVAGFMCQVLEREPVSIVRSTIRALFEVQKGFYLRTVRSEL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01560 389 MobiDBLite consensus disorder prediction 87 123 - -
Vian7g01560 389 Pfam Ribosomal protein S26e 1 105 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vian7g01560 389 FunFam 40S ribosomal protein S26 1 114 - -
Vian7g01560 389 PANTHER 40S RIBOSOMAL PROTEIN S26 1 121 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vian7g01560 389 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vian7g01560 389 MobiDBLite consensus disorder prediction 90 110 - -
Vian7g01560 389 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01560 Vian-Chr7 24485347 24491541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01560 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.483 1.10e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01560 K02976 - gmx:100808790 222.631