Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01554 ATGGGAAATAAAAGGCTCACAAAGCCAGGCACAGGCATTAGAATATGGTCTCTGATTATGCATATGGAAAGTTACCACTATTCTGGTTGGCCTCTTGCTACCAACATGGCTCAGTGCAATTCTGCACCAAACAGTGATCGATTATCTCCTTTTTCAGTTCCAACAACTCAAACACCCCCTCTTGCTTCTGACCCTCAATCTCTTCAGTTTACTGAGTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAGAGTTGCTAGTGCTTCAAAGAGTCATAGCCAAGCAGAGAAAAGGCGCAGGGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCGATGTGTGTGAGCAAAGGCATCACTGTTCCAAGTGAAACTGATGAAGTAACAATTGACTTCCAGGAAGCTGAAGATGAAAGCTACAAAAAAGTGAAGAAATTGAAGGAGAAGATGATAATCAAAGCTTCAGTTTGCTGTGATGATCGACCAGAAGTGTTCCCTGAGCTGATCGAAGTTCTGAAAGGGTTGAGACTGACAGCAGTTAAGGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGTTCAAAGGACAGTGAAGAGAACAGTGTTTGCCTCAGCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTGCTTCGTTATCTGTGGCCACTAATTGTCCCACCAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCTCATTACGTACAACAACCATAA 840 0.431 MGNKRLTKPGTGIRIWSLIMHMESYHYSGWPLATNMAQCNSAPNSDRLSPFSVPTTQTPPLASDPQSLQFTEFPLWPATIAEDRVASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMCVSKGITVPSETDEVTIDFQEAEDESYKKVKKLKEKMIIKASVCCDDRPEVFPELIEVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYVQQP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01554 279 Pfam Helix-loop-helix DNA-binding domain 90 136 IPR011598 GO:0046983
Vian7g01554 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 140 IPR036638 GO:0046983
Vian7g01554 279 CDD bHLH_AtAIG1_like 82 160 - -
Vian7g01554 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 136 IPR011598 GO:0046983
Vian7g01554 279 PANTHER TRANSCRIPTION FACTOR BHLH30 79 274 IPR045847 GO:0003700|GO:0006355
Vian7g01554 279 SMART finulus 93 142 IPR011598 GO:0046983
Vian7g01554 279 Gene3D - 81 142 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01554 Vian-Chr7 24368976 24370369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01554 73 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.238 1.81e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g01554 HLH 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01554 - - gmx:100306102 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01554 7 24368976 24370369 Vian7g01554 7 24368976 24370369 ECH
Vian2g03017 2 50849708 50850822 Vian7g01554 7 24368976 24370369 PCT