Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01553 ATGACGGACGTTGGCAACGATCGGGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGCGATACTACTGAAATTGGTGAACCAGTATGGCGCGCGGAATTGGTCCCTCATCAGCAGCAGCATTCCGGGGCGTTCTGGCAAGTCCTGCCGGCTGCGATGGTGCAACCAGCTGAACCCGGAGGTGCAGCACCGCCCCTTCACTTCGACGGAGGATCAGATTATCATTAAGGCGCACGCTATTCACGGGAACAAGTGGGCCACCCTCTCTCGCCTCCTCCCTAGCCGCACAGACAACGCCATTAAAAACCACTGGAACTCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTTGTCATCGGCTGCATCGCCAAACACCAAGCGCGCCTCTCCGTTGGAGTGGGACTACCCTTTCAAGAAACAGCATGCGGAGAAAGAAAGAGAGGAGATTCCCGTTATCACGCCTTTGAGTCTTTTTCCCTCATCTGAAAAATCAGATGGAGAACTGGAAGAGGGAGAGAAAAGAGTGGCAGAAGAAAACAAGATTTCGAATCAGGATTACTTTCTGAAGATCATGCGGCGCATGATTGCTGATGAGGTTAGCAATTACCTTCATACTTTGTACAAGGGAAGGGAATACTCTTTAGATCATCCTCCAAATCTTCACAAATAA 666 0.518 MTDVGNDRVKGSWSPQEDAILLKLVNQYGARNWSLISSSIPGRSGKSCRLRWCNQLNPEVQHRPFTSTEDQIIIKAHAIHGNKWATLSRLLPSRTDNAIKNHWNSTLRRRSTMSQLSSAASPNTKRASPLEWDYPFKKQHAEKEREEIPVITPLSLFPSSEKSDGELEEGEKRVAEENKISNQDYFLKIMRRMIADEVSNYLHTLYKGREYSLDHPPNLHK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01553 221 Gene3D - 63 131 - -
Vian7g01553 221 PANTHER MYB PROTEIN-RELATED 10 126 - -
Vian7g01553 221 Gene3D - 9 61 - -
Vian7g01553 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 60 IPR017930 -
Vian7g01553 221 SMART sant 9 58 IPR001005 -
Vian7g01553 221 SMART sant 61 109 IPR001005 -
Vian7g01553 221 CDD SANT 64 107 IPR001005 -
Vian7g01553 221 FunFam MYB transcription factor 10 61 - -
Vian7g01553 221 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Vian7g01553 221 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Vian7g01553 221 MobiDBLite consensus disorder prediction 110 129 - -
Vian7g01553 221 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vian7g01553 221 MobiDBLite consensus disorder prediction 110 125 - -
Vian7g01553 221 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Vian7g01553 221 CDD SANT 12 54 IPR001005 -
Vian7g01553 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Vian7g01553 221 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01553 Vian-Chr7 24360912 24361577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01553 7 138 MYB Transcription Factor Family AT4G37260 60.606 1.17e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian7g01553 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01553 - - vra:106763298 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01553 7 24360912 24361577 Vian7g01553 7 24360912 24361577 ECH