Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01550 ATGTCGATTCGCGATTCCGAATCCTTCAATTGGCACTCCGACGCGGAGCTCGAAGACCAGGACCTCCATATCCGCGGCCAGAAGCTCTTCTTCATCGTCGTCCTTTTCTCCATCGTCGTCCTCTTCACCGCGCTCTTCCTCTTCGCGCGACGGATCTGCCACCACCACGGCCTCCTCTTCGACGCCGTCCCACCGCAACAGGCGCCGCCGACGCTTCCTTCTGATGACGGCCTCGACGCCGACGCGATCAAGCGGCTACCGATTATCCTGCACCAGCGCACGGCGGCGGAGGAGACGGAGTGCTGCATCTGCCTCGGCGCGTTCGTCGACGGCGCGAAGCTGAAGGTTCTCCCTGGATGCGAGCACAGCTTCCACAGCGAGTGCGTGGACAAGTGGCTCGCGAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTGAAACTCAATCCTTCGTTACCGAGGATTTTGATCCAATCGCCACCCGTTAGAACAACGCTTCCTCTCTGA 507 0.6016 MSIRDSESFNWHSDAELEDQDLHIRGQKLFFIVVLFSIVVLFTALFLFARRICHHHGLLFDAVPPQQAPPTLPSDDGLDADAIKRLPIILHQRTAAEETECCICLGAFVDGAKLKVLPGCEHSFHSECVDKWLANHSNCPLCRASLKLNPSLPRILIQSPPVRTTLPL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01550 168 SMART ring_2 101 142 IPR001841 -
Vian7g01550 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
Vian7g01550 168 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vian7g01550 168 SUPERFAMILY RING/U-box 87 150 - -
Vian7g01550 168 Pfam Ring finger domain 100 143 IPR001841 -
Vian7g01550 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01550 Vian-Chr7 24330240 24330746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01550 11 151 C3H Transcription Factor Family AT3G11110 41.497 9.16e-29 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03018 2 50853605 50859601 Vian7g01550 7 24330240 24330746 PCT