Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01546 ATGAATGATGTTCTATCTGCTATGATGGTCTCCCAAGGCTTGTTACCATCTGGGTCTCTGCTAGATTCTTTGATTCATATATCCAAAGAAGTTGACTCAATGGAAAAGTTTCCCTTCGTACACATAAGAAACGTTTCATCCATGATCAGAAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTAAAGAATCGGGTACTCCACTTCCTCCTTCTTCAGTCCTGTGTCTCACAGAACTGTTCTCTGTGATAAGAAGAGTTAAGGTTTTGATCCAAGACTGCAAAGATGGAAGCTCTCTTTGGAGTCTGATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTGGTGAAGGAGATGGGAAGGGCCCTTGATATTCTTCCTTTGAGTTTGCTCAATGTAACATCAGATATTAGGGAACAGGTGGAGCTTCTTCACAAGCAAGCAAAGAAGGCTGAGTTATTCATTGATCCTAGAGAGCTTCATCGAAGAGAACAACTTAAACTAGCAATGGCTAACAACAGTTTACAAAAGAAGAAGAACAAAGGGTTTGTTGAGTTTGGAAAAGTGGAAGAAATACTGAGCAGCATTGGTCTGAGAACCCCATCAGATTATGATGGAGAAATATCAAAGTTAAAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTCATCATTGTCTCCAATATAAACAACCTCATATCGTTGGTGTCTTATTCCAAAACCATGATATTCAGAGATGGAGAGAGTAGTAGAAATGAAGAAGATTGTAAGCCACTGTCTTCATTTTTGTATAACAAAGTTCATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATAACACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCTGGGCACACATATGATAGAACATCGATTGGACAATGGATAAACTCTGGTCATCATACATGCCCCAAAAGTGGGCAAAGGTTAATTCACACTGCTTTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCAGTTAATGATCCTTCAACCGAGGGAAACAGCCACAACAAGAAGAACTCGAAGGAGGAGGCCATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTCAACCGGAGTGTCATAGCTGAAGTAGGGGCCATTCCCTTTCTTGTAACACTTCTGGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACCTTGTTCAACCTCTCCATATTTGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTAGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCAGCAATATACAGCTTGTGTATGGTGGATGAGCTGAAAGTGCATATTGGAGGAAGACCAAGGGCAATACCTGCTTTAGTCGGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCGTCTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAAGTTAGTGCTGTTAAGGCTGGTGCAGTTTCTGTGCTGGTAGAATTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTGCACTCCTCGGTTGCTCTGAGGGATTGCAAGAGATAAGAAATAGTAGAGCATTGGTGCCACTTCTCATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTTGGACTGTGCAAAGAAGAGGGAGAAGTGGTTGCAAGAAGACTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTTCTGATGGATCTTTGAGAGCTAGAAGAAAAGCAGATGCACTGCTCAGACTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2052 0.422 MNDVLSAMMVSQGLLPSGSLLDSLIHISKEVDSMEKFPFVHIRNVSSMIRRIKLLSSLFEEIKESGTPLPPSSVLCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKKAELFIDPRELHRREQLKLAMANNSLQKKKNKGFVEFGKVEEILSSIGLRTPSDYDGEISKLKAEAQNQAGTGGLIIVSNINNLISLVSYSKTMIFRDGESSRNEEDCKPLSSFLYNKVHDSSSSSQSMTPNVPDEFRCPITLDLMRDPVIVSSGHTYDRTSIGQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNDPSTEGNSHNKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAAAIYSLCMVDELKVHIGGRPRAIPALVGLLKEGTSIGKKDAASALFNLAVYNPNKVSAVKAGAVSVLVELLMDDKAGITDDALAVLAALLGCSEGLQEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLASDGSLRARRKADALLRLLNRCCSQPHHSV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01546 683 FunFam RING-type E3 ubiquitin transferase 489 676 - -
Vian7g01546 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Vian7g01546 683 CDD RING-Ubox_PUB 284 336 IPR045210 -
Vian7g01546 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Vian7g01546 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vian7g01546 683 SUPERFAMILY RING/U-box 271 357 - -
Vian7g01546 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Vian7g01546 683 PANTHER U BOX DOMAIN-CONTAINING 44 677 - -
Vian7g01546 683 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Vian7g01546 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vian7g01546 683 Gene3D - 365 515 IPR011989 -
Vian7g01546 683 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
Vian7g01546 683 Gene3D - 516 677 IPR011989 -
Vian7g01546 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 464 505 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 423 463 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 382 421 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 548 588 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 589 630 IPR000225 GO:0005515
Vian7g01546 683 SMART arm_5 507 547 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01546 Vian-Chr7 24278774 24280825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01546 18 678 U-box Gene Family AT3G46510 38.102 9.11e-124 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01546 - - gmx:100793498 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01546 7 24278774 24280825 Vian7g01546 7 24278774 24280825 ECH