Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01534 ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAATTGTTGAGACGCAGGTGCACGAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTGAAGAACCTCAAAAGTTTGCCATAGTTCACAAAGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCAGCAGAGAACAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTGAGAGATCCTGTGTATGGTTGTGTTGGAGCCATATCTTATTTGCAAAATCAAGTTGCTGATCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTCTGTCTTCAGATGGAAAATGAATCACTGATACCAATCTCAGAAACTGATCTACACCAGAAGTCTTATCTTCTTCAGAATAATTTCTCTCAGTTACTTGACTTTAACACTTCCAACAGTGTAGTTCAATATTCCCCTAATCATCTTACACAATGA 474 0.3924 MGGNSPCASCKLLRRRCTKDCIFAPYFPSEEPQKFAIVHKVFGASNVSKMLQELPVQQRTDAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCLQMENESLIPISETDLHQKSYLLQNNFSQLLDFNTSNSVVQYSPNHLTQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01534 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 126 - -
Vian7g01534 157 Coils Coil 85 112 - -
Vian7g01534 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vian7g01534 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01534 Vian-Chr7 24149674 24150377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01534 3 131 AS2 family AT2G30130 76.692 5.40e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian7g01534 LOB 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01534 - - gmx:100812780 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03029 2 50958202 50958939 Vian7g01534 7 24149674 24150377 ECH
Vian7g01534 7 24149674 24150377 Vian7g01534 7 24149674 24150377 ECH
Vian2g03029 2 50958202 50958939 Vian7g01534 7 24149674 24150377 PCT