Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01448 ATGGCCACCGGGGTGTGGCCCGTAGCCGCCGTATCACTGGTGCTCCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAATTGCTCCCAGCACGAAACCAACGCCACAAATGGCAACCTCTGCAACAGTGTTCCATCATGCGCATCCTACCTCACCTTCAAATCTTCCCTCCCAGATTACACCACCTCTATCTCCATCTCTTACCTCCTCAATTCCAGCACCTCCGCCATGGCCGCCGCAAACAACATCACAGATGTCCAATCCATCCCCGCCGAAACCCTCATCACCGTTCCCATCAACTGCTCCTGCTCCGGCCTCTACTATCAGCACAACGCCTCTTACAACATCAAAGTACAGGGCGAAACCTACTTCTCCATCGCCAACAACACATACCAGTCCCTCACCACGTGTCAGGCTCTCATGGACCAAAACACCTACGGTGAACGTGACCTCGTTGCGGGTCTCGACCTCCACGTGCCTCTAAGATGTGCCTGCCCCACCCAGAAACAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTTTCTCAAGGAGAAACGGTTTCTTCCATCGCTGAAATCTTTGGTATTGACCAACAGAGCATCCTCGAAGCAAACGAGCTTTCTGATACCTCCTTTATTTTCTACTTCACGCCGATTTCAATTCCTCTAAAAACAGAGCCGCCAACGAATTTACTGAGAGCAGCGGCTCCCCCGAACGACTCCCCGTCACCGCCGCCTCCGGCGGCGGAGGAAGACTCGGACTCTTCCAAGAAATGGGTCATTATCGGAATCGTGGTTGGGGTTGTTGTGCTGCTTCTTGTCTGCGCTGCTCTATTTTTCTTCTGTTTCTATCGGCAGCGACGGGTACAACAGCCATCGCCGACTCCGGCAGCGAAGGCTTTCTCGGGCCCCACCCAGAAACAGAGCAACGAAATGACTCTTCCGACGTCGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATCGAGTCGTTGAGCGTGTACAAGTTTGAGGAGTTGCAGACGGCGACAGTGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCATTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGGGATGTGTCGAGTGAGATCAACATTCTCAAGAGGATTAACCACTTCAATGTTATAAGATTGTCGGGTTTTTGTGTTCACAAAGGTGACACCTATCTGGTGTACGAGTTTGCCGAGAATGATTCTCTCGAAAATTGGCTGCATAGTGGTAATAAGAAGTACGAGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCATGATGTTGCTGACGCTCTTAATTATCTTCATAACTATACCAGTCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAACGTGCTTTTAGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAGCGGTGGAGGGTGAAGGGGATGACAGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCTGAGTACATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTTCGTTTGGAGTTGTGCTTTTGGAGCTTCTTTCAGGGAGAGAGGCTGTTGGTGGGGTTAAGAATGGATCTGGGGAGCAGATGCTGTCGCTGACTGTGAATCAGGTGCTTGAAGGAGAGAACGTTAGAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATGCAAGACCACAGATTTCTGAGGTTTTCATGACTTTGTCCAAGATTCAATCCTCTACGATGGATTGGGATCCCTCTGATGAGCTTGAACAGTCTAGATCTGTCAGCCAAATTTCTGATAGCAGATAG 1986 0.4894 MATGVWPVAAVSLVLLLCSSIPKSESQQEYVNNKQLNCSQHETNATNGNLCNSVPSCASYLTFKSSLPDYTTSISISYLLNSSTSAMAAANNITDVQSIPAETLITVPINCSCSGLYYQHNASYNIKVQGETYFSIANNTYQSLTTCQALMDQNTYGERDLVAGLDLHVPLRCACPTQKQSEAGFKYLLTYLVSQGETVSSIAEIFGIDQQSILEANELSDTSFIFYFTPISIPLKTEPPTNLLRAAAPPNDSPSPPPPAAEEDSDSSKKWVIIGIVVGVVVLLLVCAALFFFCFYRQRRVQQPSPTPAAKAFSGPTQKQSNEMTLPTSQSWSLSSEGIRYAIESLSVYKFEELQTATVFFSEENKIKGSVYRASFKGDYAAVKILKGDVSSEINILKRINHFNVIRLSGFCVHKGDTYLVYEFAENDSLENWLHSGNKKYENSVSLSWVQRVHIAHDVADALNYLHNYTSPPHVHKNLKSGNVLLDGNFRAKVSNFGLARAVEGEGDDRGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFSFGVVLLELLSGREAVGGVKNGSGEQMLSLTVNQVLEGENVREKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNARPQISEVFMTLSKIQSSTMDWDPSDELEQSRSVSQISDSR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01448 661 CDD LysM 190 226 IPR018392 -
Vian7g01448 661 Gene3D Phosphorylase Kinase; domain 1 325 424 - -
Vian7g01448 661 SUPERFAMILY Protein kinase-like (PK-like) 354 632 IPR011009 -
Vian7g01448 661 SUPERFAMILY LysM domain 189 234 IPR036779 -
Vian7g01448 661 SMART LysM_2 190 234 IPR018392 -
Vian7g01448 661 FunFam PTI1-like tyrosine-protein kinase 3 425 646 - -
Vian7g01448 661 Gene3D Transferase(Phosphotransferase) domain 1 425 656 - -
Vian7g01448 661 Gene3D LysM domain 189 244 IPR036779 -
Vian7g01448 661 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 645 - -
Vian7g01448 661 MobiDBLite consensus disorder prediction 640 661 - -
Vian7g01448 661 Pfam Protein kinase domain 388 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01448 661 MobiDBLite consensus disorder prediction 306 329 - -
Vian7g01448 661 Pfam LysM domain 191 234 IPR018392 -
Vian7g01448 661 MobiDBLite consensus disorder prediction 242 265 - -
Vian7g01448 661 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01448 661 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01448 Vian-Chr7 23068991 23070976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01448 1 654 Receptor kinase-like Gene Family AT2G33580 52.941 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian7g01448 Pkinase 8.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01448 - - gmx:100818534 998.038