Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01445 ATGTGTGAAATGGAGATTCGTAAGACATATGAGAAAGGCTATAGAGCCAAGAGCCCAAAAATCCCTATTGTTCTGACTGACTATCCATTTGGGTTCTTTGGAGTTTTCTACCAAAAAAGACTCAGATTTTTTAGCTTCATTTCCGGGAGTACTCTCTGGACAATTATATGCAGTGCTCTTTTTGAGAAAACAGTAAGGTGGGGACTAGGAACAACTGATCCAAGCCAAAGAGGTAGAGCTAGATATACAGCTAGTGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCACTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAAGAGTCATGTGCCAAATGTGAATCAATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCTATAGGTGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAACCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCGTCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTTCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCCCAAAAGCAGGCACTGGCAGAATCCACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 1203 0.4372 MCEMEIRKTYEKGYRAKSPKIPIVLTDYPFGFFGVFYQKRLRFFSFISGSTLWTIICSALFEKTVRWGLGTTDPSQRGRARYTASGFGGNSCSELSEMDMMNMETNRKFLSLPLSNNSGAQMRTDRRVPVATNSIAQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKETMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01445 400 Gene3D - 302 375 - -
Vian7g01445 400 SUPERFAMILY Homeodomain-like 306 378 IPR009057 -
Vian7g01445 400 Pfam ELK domain 284 305 IPR005539 GO:0003677
Vian7g01445 400 ProSitePatterns 'Homeobox' domain signature. 342 365 IPR017970 GO:0000981|GO:0006355
Vian7g01445 400 SMART KNOX2_2 203 254 IPR005541 GO:0003677|GO:0005634
Vian7g01445 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 200 374 - -
Vian7g01445 400 CDD homeodomain 316 368 IPR001356 GO:0003677
Vian7g01445 400 ProSiteProfiles ELK domain profile. 284 304 IPR005539 GO:0003677
Vian7g01445 400 SMART HOX_1 306 371 IPR001356 GO:0003677
Vian7g01445 400 Pfam Homeobox KN domain 324 363 IPR008422 GO:0003677|GO:0006355
Vian7g01445 400 Pfam KNOX2 domain 206 252 IPR005541 GO:0003677|GO:0005634
Vian7g01445 400 ProSiteProfiles 'Homeobox' domain profile. 304 367 IPR001356 GO:0003677
Vian7g01445 400 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Vian7g01445 400 Pfam KNOX1 domain 152 193 IPR005540 GO:0003677|GO:0005634
Vian7g01445 400 SMART ELK_2 284 305 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01445 Vian-Chr7 23032611 23037861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01445 152 394 Homeobox Transcription Factor Family AT1G62360 68.482 3.07e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vian7g01445 KNOX2 1.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01445 - - gmx:100791704 579.326