LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian7g01391	ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCTGAACCCGCCAAACCCATCGAGCCACAGCAAGAAGACCAAGAACCAGAGGAACAACTCGACCAGCAAGAGCAACCCAATCCCGAACCAACCTTAGAAGACCCCAACACCATGGCCGTCGACGAACCAACAGAGGAACAGCAGCAAGAACAGCAAATCGCCGAAGGTGAAGAAGAGGAAGAGGAATTAGAGGAGCAACAGGAGCAGGAGCCAGAAACCCTAGAAGAGCAACAGGAGCCGGAAGCTCTAGAAGCTGCGAACCACGCCGAAGCAAACGGTGCTGGAGAAGAAGAGAACAACGAAGAGGAAGATGAGGATCTCAGTCTTGAAGACGAGCCCGTGGAGAAACTTCTCGAACCATTCACGAAGGAGCAGCTGCATGCTCTTGTGAAGCAGGCCGTGGAGAGGTTCCCTGAATTTGTCCAGAGCGTACGCCAGCTCGCCGATGTGGACCCCGCACACCGGAAGATCTTCGTCCACGGCCTCGGCTGGGACGCCACTGCCGAAACCCTAACTTCCGTGTTTGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTCTCTGGCAAATCGAAGGGTTACGCTTTCATCCTTTTCAAGCACAGGGATGATGCTCGCAAGGCGCTGAAAAATCCCCAGAAGAAAATTGGAAACCGTACCACTTCTTGTCAGCTGGCCTCTGCTGGCCCTGTTCCGGCGCCCCCGCCGAACGCCAATCCGGTTTCTGAGTATACGCAGCGGAAGATATTTGTGAGCAACGTGAGTGCTGAGATTGATCCCCCAAAACTGCTTGATTTCTTCAAGCAATTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTGGACAAGAACACTGGGAAACCTAAGGGTTTCGCTCTGTTTGTTTATAGGTCTGTGGAAAGTGCTAAAAAGGCTTTGGAAGAACCTCATAAGAACTTTGAAGGCCATACTTTGTATTGTCAGAAGGCTGTCGATGGTCCCAAGGGGAACAAAGGGTATCATCAGTATCACCATCAGCAGCATTCCCATCATCATCACCATCACCATCATCAGCCTCATTATCAGAGAAAGGAGAAGAACAAGTATTCCTCTGGGGGAGGTGGTCCGTCCCATGGCAGTGGTCATTTGATGGCCCCCTCGGCGTCTGCTGTGGGGGGTTTCAACCCGGGCGTGCCGGCTCAAGGGTTGAATCCTGCTCTTGGACAGGCGCTAACGGCTTTGCTCACTAACCAGGGAGCTGGATTAGGTCTTGGAAATCTGCTTGGAGGGCTTGGTGGTGCCCCCGTTAACCAGGCGGGGCCACCTGCCCCGTATGGGAATCAGCCTGCTATGGGATATGGGAACCAACCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGTCAGAGCAGTGCTGTCAGACCCCACCCTGGTGCGGGCGCTCCTTACATGGGTCATTAG	1485	0.5374	MAKKRKLRSSDPEPAKPIEPQQEDQEPEEQLDQQEQPNPEPTLEDPNTMAVDEPTEEQQQEQQIAEGEEEEEELEEQQEQEPETLEEQQEPEALEAANHAEANGAGEEENNEEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFVQSVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPPKLLDFFKQFGEVEDGPLGLDKNTGKPKGFALFVYRSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSAVRPHPGAGAPYMGH	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian7g01391	494	Coils	Coil	57	87	-	-
	Vian7g01391	494	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	59	349	-	-
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	348	370	-	-
	Vian7g01391	494	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	262	340	IPR000504	GO:0003723
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	471	494	-	-
	Vian7g01391	494	SMART	rrm1_1	167	239	IPR000504	GO:0003723
	Vian7g01391	494	SMART	rrm1_1	263	335	IPR000504	GO:0003723
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	62	90	-	-
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	107	121	-	-
	Vian7g01391	494	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	264	332	IPR000504	GO:0003723
	Vian7g01391	494	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	168	235	IPR000504	GO:0003723
	Vian7g01391	494	SUPERFAMILY	RNA-binding domain, RBD	151	243	IPR035979	GO:0003676
	Vian7g01391	494	SUPERFAMILY	RNA-binding domain, RBD	246	360	IPR035979	GO:0003676
	Vian7g01391	494	Gene3D	-	158	244	IPR012677	-
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	342	395	-	-
	Vian7g01391	494	MobiDBLite	consensus disorder prediction	1	121	-	-
	Vian7g01391	494	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	166	243	IPR000504	GO:0003723
	Vian7g01391	494	Gene3D	-	250	388	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian7g01391	Vian-Chr7	22395554	22397038	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian7g01391	258	341	C2H2 Transcription Factor Family	AT2G19380	28.571	1.02e-08	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian7g01391	K12741		-	gmx:100783742	679.478