Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01384 ATGGGGAACAGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAGGCTCAAAGTCTCGAAGTAAGACAAAAGAGAACTCAAAATCTACTGAAGGAAAAGCTCCTTTAAAAACTTTAGGATCAAATGTTGACAAACGCATCTCCAGTAACCTAAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTGATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATGAGAAAACTTATGCTCCCACAAGACCAGGGACTGGAATTGTTGTGGCCATCAAAAACCTTAAACCAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTTAGAAAAGGTGTTCAACCCATTCCCTGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTGGATAGAAATGTTATATATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTCAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCGGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGAGTGTAGTTGAAGATGATAAACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGACCATTCCTGAGTGATAGCAGAAGAATTTGGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAGAGGAGCACAGGCAGCAGCAATACTTGCACTACGGTGTCTAAATACAGATCCAAAAAACAGACCAACTATGGTGAATGTGCTAGCAGAATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGAACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA 1170 0.406 MGNSCRKPVAHVSSTSFFGGSKSRSKTKENSKSTEGKAPLKTLGSNVDKRISSNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDEKTYAPTRPGTGIVVAIKNLKPESFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRKGVQPIPWTIRINIAVAVARGLTFLHTLDRNVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRSVVEDDKPGFSEETLVDWARPFLSDSRRIWRIMDTRLGGQYSKRGAQAAAILALRCLNTDPKNRPTMVNVLAELEALNSSNSFPRTPKSGTENHTTKHSSHSQKSATNNNRL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01384 389 FunFam Serine/threonine-protein kinase BIK1 39 155 - -
Vian7g01384 389 CDD STKc_IRAK 76 354 - -
Vian7g01384 389 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Vian7g01384 389 FunFam PTI1-like tyrosine-protein kinase 3 156 362 - -
Vian7g01384 389 Pfam Protein kinase domain 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01384 389 SUPERFAMILY Protein kinase-like (PK-like) 48 352 IPR011009 -
Vian7g01384 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vian7g01384 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01384 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Vian7g01384 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01384 389 MobiDBLite consensus disorder prediction 356 389 - -
Vian7g01384 389 PANTHER OS01G0588500 PROTEIN-RELATED 27 354 - -
Vian7g01384 389 MobiDBLite consensus disorder prediction 1 42 - -
Vian7g01384 389 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Vian7g01384 389 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01384 Vian-Chr7 22321786 22325402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01384 48 357 Glycoside Hydrolase AT3G07070 50.794 1.41e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian7g01384 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01384 - - pvu:PHAVU_008G205600g 725.702