Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01376 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGTATCAAAACCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCTATTCACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCTGGGGACTCTTTCCCCAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCATCTTGCCTCAAGCTTCCCTGGGAAGGCTCAAGGGGTTAGATTCAGTACCGTAGCTGCTCCAGCTGAAGCTGCACCTGCCAAATCGGCTGCTACTGCTGATGAAGATGATGATGATCTTGATCTCTTTGGTGACGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTACTCGATGTCAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTGCCAGTGGGATATGGAATCAAGAAGTTGCAGATCATGATGACTATTGTGGATGACCTTGTATCTGTGGACACCCTCATCGAAGAACACCTGACTGTTGAGCCATGCAACGAGTATATCCAAAGTTGTGACATTGTTGCATTCAACAAAATTTAA 672 0.4702 MAVTFSDLHTEEGIKTLDQFLSGKTYISGDLFTKDDIKVYAAVVEKPGDSFPNAAKWYDAVSSHLASSFPGKAQGVRFSTVAAPAEAAPAKSAATADEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAFNKI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01376 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vian7g01376 223 Gene3D - 127 223 IPR014717 -
Vian7g01376 223 MobiDBLite consensus disorder prediction 111 131 - -
Vian7g01376 223 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Vian7g01376 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Vian7g01376 223 FunFam Elongation factor 1-beta 1 like 128 223 - -
Vian7g01376 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vian7g01376 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Vian7g01376 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Vian7g01376 223 Gene3D - 5 63 - -
Vian7g01376 223 MobiDBLite consensus disorder prediction 87 106 - -
Vian7g01376 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 223 - -
Vian7g01376 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01376 Vian-Chr7 22245981 22249171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01376 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 75.877 5.17e-111 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01376 K03232 - gmx:100816855 346.28