Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01375 ATGTCAAGTGGAGCAACGCACTGGTGTTATGCGTGCAGACAACCAATTGTGCTTGATGGGGGAGACACTCTCTGTCCTTACTGTGATGGAGGTTTTGTACAAGAACTTGATGAGTTGCGAGGAGCAGCACCTGCACCCCAGCATTCATATTCTTCATCACAGTCCGGAGAGTTTCATCAAATGCCTGACCTTTTTGATGCTATACATGCTTTCATGGGGCAAAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGCAAGGTCGGGTTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTCAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCTCCTTGGCCACTGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTCATTGAGCAACTCACCATGAATGACAGGCGAGGTCCACCACCGGCAGCACGTTCTTCGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATCTTCGCTTGGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTAGGCACTGAAGCCAGAGAGATGCCATGCAACCATATCTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGGTTAGTTCCCGCAGTGCTCGAAGTTTTGGAGGAAGGAATGCCAGCACCAGCAGTGGCACTGACAGCAGCTCCAGGAGCAGGGAGAACAGCAGCCCTCAGAACCATGGAAGGAGAAACCCCTTATCATTTTTATGGCCATTTCGCTCCTCTTCTAGCTCAAACAATAGTCATTATTCTGAGACTGGTGGAAGCAGCTCTTCAACCACTCCTGATCAGAATAATGGAACGAGTTATAGTGGATGGCCTTTTGATCACTAG 1014 0.4724 MSSGATHWCYACRQPIVLDGGDTLCPYCDGGFVQELDELRGAAPAPQHSYSSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRARSGSFPAPEQSWGVFSSGPYLIFHGQVPGFSLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVSSRSARSFGGRNASTSSGTDSSSRSRENSSPQNHGRRNPLSFLWPFRSSSSSNNSHYSETGGSSSSTTPDQNNGTSYSGWPFDH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01375 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Vian7g01375 337 CDD RING-H2_RNF126-like 203 244 - -
Vian7g01375 337 FunFam E3 ubiquitin-protein ligase RING1-like 167 250 - -
Vian7g01375 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 248 - -
Vian7g01375 337 SUPERFAMILY RING/U-box 183 250 - -
Vian7g01375 337 Pfam Ring finger domain 202 244 IPR001841 -
Vian7g01375 337 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vian7g01375 337 SMART ring_2 203 243 IPR001841 -
Vian7g01375 337 MobiDBLite consensus disorder prediction 253 337 - -
Vian7g01375 337 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01375 Vian-Chr7 22238683 22239696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01375 147 252 C3H Transcription Factor Family AT5G01980 43.519 5.22e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01375 K11982 - gmx:100813674 580.096