Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01372 ATGTTTTCTTACACTACTGTTGACCCCCTTGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCACTTGAGCTATTTCTACAAGATTTGTGTGATCGAACATATGAGATAACTCTGAGGAGGGGAGCTAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAACGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGTAGCAAATTGCGATGACCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACCAGGAGCCCAAGAGAAATAACAAGGCGGAGCCGGGACAAACCAGTGGCAGAGGAAGGGGTAGGGGCAGAGGAAGGGGTCGTGGCCGTGGAAATAGAAATGTAGATCAAGAGATGAATTCACAAGCCAAGTGTGCAGAAGATTCTGATGCATTGAAGCAAAATGAAAAGCAGACTCAAAGCAATGAAAGCATGGAAAACGCGTCATCACCTGAAGAAGTTAAGCAGACTTTTCCAGTTAGCAAGCCGGCTCAGGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGAATCGTTAACATCACCAACTGCTGTTCCAACTAGTTCATCAGCAAAATCAATATCAGAAGAGAAACATCATGAGGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAA 834 0.4137 MFSYTTVDPLARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANCDDHTVKRRKVAEDDNDSHQEPKRNNKAEPGQTSGRGRGRGRGRGRGRGNRNVDQEMNSQAKCAEDSDALKQNEKQTQSNESMENASSPEEVKQTFPVSKPAQVSIRNFDLNMDPDENMESLTSPTAVPTSSSAKSISEEKHHEEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01372 277 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 70 IPR003958 -
Vian7g01372 277 MobiDBLite consensus disorder prediction 209 247 - -
Vian7g01372 277 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 156 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 147 161 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 97 121 - -
Vian7g01372 277 FunFam dr1-associated corepressor homolog 3 85 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 212 230 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 168 196 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 93 196 - -
Vian7g01372 277 MobiDBLite consensus disorder prediction 231 245 - -
Vian7g01372 277 SUPERFAMILY Histone-fold 17 87 IPR009072 GO:0046982
Vian7g01372 277 Gene3D Histone, subunit A 3 85 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01372 Vian-Chr7 22136411 22138427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01372 9 266 CCAAT-HAP5 Transcription Factor Family AT3G12480 44.718 2.90e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vian7g01372 CBFD_NFYB_HMF 4.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01372 K21752 - gmx:100814800 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01372 7 22136411 22138427 Vian7g01372 7 22136411 22138427 ECH