Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01353 ATGGCTTTCACACTAGACAGGTGTGAAGACAGCATGGTATTCACCATGGATTCTCAGAAGTCTGTGCCTGCTCCCTTTCTGACAAAAACATACCAACTTGTTGATGACCCTCTCACTGACCACATTGTGTCTTGGGGTGATGATGAAACCACGTTTGTTGTGAGAAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAGCTAAATACCTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCCTTATCAACAACATTACCATATGCATGACCAACCACCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCATTACCATCTCCTAAGGCAGGCAATGATATCTTAACAGCACTTTCTGAGGACAACCAGAGACTGAGAAGAAAGAACTTCATGCTGTTATCAGAACTGACTCACATGAAGAATCTATACAATGATATCATATATTTCATCCAAAACCATGTAAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAGTCTCGAAATTTGATCAGAGCAGCTAAGAGTCATATCATGGAGAAGTCTTTGGTAAGTTCCAGTGATGAGGCTAATGGTTCTGTGAAGCTCTTTGGGGTTCCTCTCTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTCATCAACAAGAATAG 819 0.4237 MAFTLDRCEDSMVFTMDSQKSVPAPFLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHPYQQHYHMHDQPPQLLQPDENLCWIDTPPLPSPKAGNDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSSAILKLVELESSPQSRNLIRAAKSHIMEKSLVSSSDEANGSVKLFGVPLCGKKRLHPGNLHQQE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01353 272 Gene3D - 18 117 IPR036388 -
Vian7g01353 272 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 208 IPR027725 -
Vian7g01353 272 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Vian7g01353 272 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian7g01353 272 FunFam Heat stress transcription factor B-4 18 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01353 Vian-Chr7 21838265 21839444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01353 20 264 HSF AT1G46264 51.014 4.46e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian7g01353 HSF_DNA-bind 4.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01353 K09419 - gmx:100776060 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01353 7 21838265 21839444 Vian7g01353 7 21838265 21839444 ECH