Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01336 ATGGGTTGGAAGGACTATCTTAGGAAAAAAGGAAAAGATATGGATGACACCTTAGATTATAGACTACAGTATATAGCTCAATTGAGACGTGAGTGGTGGGGAAGTGACTTCCACGCGCCAGAGCCCACAAGTAATGAGTGGCGTCATCCCAGAGGAAGCGAGGAAGACATAGGAAGAACATCAACATCAAATTTTACAGATTATAAGGTTTGTGTCGTGGAGGAGGAAGAAGATGAAGAGAGAGATAAAAAAGAAAGAAAGAGGGACACAGTAGTAAGTAAAAATCAAGCACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCGACTGGTTCTTCCGCTGCTGCTGCTGCTGCCGGTGGCCGTGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCAGCGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCCTTCCACCATCACCACCACCAGCAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCAGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTGGAATCCGACAACTTCCTCGGAAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGGCCCCATCAGAGCCACTACATGAAGAAGCAACAGCAGCAGGGGCTTCTCGACCAAAGTAACACCAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGAGGAACTACTACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACTGCGGCCACTGCGGCGGTAGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACAAGCTCTAGCCATCAAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCTGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGCGGAAGTGGAAGCGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTGTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA 1530 0.5275 MGWKDYLRKKGKDMDDTLDYRLQYIAQLRREWWGSDFHAPEPTSNEWRHPRGSEEDIGRTSTSNFTDYKVCVVEEEEDEERDKKERKRDTVVSKNQALSVVATTRRLPSDSGAFADWAATGSSAAAAAAGGRAVPVDDLSLGFNAGPAAPAAATGPTSGMWSGANRSINYPEMGMFVVAPASSFHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRPRGGGIQFWQDQGPHQSHYMKKQQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01336 509 MobiDBLite consensus disorder prediction 35 61 - -
Vian7g01336 509 MobiDBLite consensus disorder prediction 339 397 - -
Vian7g01336 509 MobiDBLite consensus disorder prediction 460 509 - -
Vian7g01336 509 MobiDBLite consensus disorder prediction 242 299 - -
Vian7g01336 509 Pfam Domain of unknown function (DUF702) 288 445 - -
Vian7g01336 509 NCBIfam putative zinc finger domain, LRP1 type 290 332 IPR006510 -
Vian7g01336 509 MobiDBLite consensus disorder prediction 242 298 - -
Vian7g01336 509 MobiDBLite consensus disorder prediction 342 393 - -
Vian7g01336 509 MobiDBLite consensus disorder prediction 42 56 - -
Vian7g01336 509 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 182 491 IPR007818 GO:0003700|GO:0006355
Vian7g01336 509 NCBIfam LRP1 C-terminal domain 397 444 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01336 Vian-Chr7 21663517 21666167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01336 97 489 C2H2 Transcription Factor Family AT5G12330 50.704 2.18e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian7g01336 DUF702 2.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01336 - - gmx:100817745 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01336 7 21663517 21666167 Vian7g01336 7 21663517 21666167 ECH