Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01298 ATGAAGAACACTATCCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCAGAAAACTACTCAATTAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCGCCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGAGAATTGGAAGAGGAAAAGTTTGCTAATATTTTCTCCCCTGGTGCCCCCCATCATCCTCCTTCACCTTCACAACCCCTACCATCTATCATGAAATCCTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTGCTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTTTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAGTGGCGTTTGGGCCACCACTAATAATGCTACTTTATCGGCTGAGCCTGAAGCTATAGATTGTATCCATAGACGATTTCCTAGAAGTGAGAGAGGAAAATCAGAGATAATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTTGTTCTCAATCAACAAGAGAACATGACCAAAAGAGAAAAGGGACTGAACAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTGCAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCATATGCCAAACCACAATTTACTGTGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCATGAATAGTGCCTCTCAGCCAATGAACGCGTTGAGATATGGTTCCCAAGCAATGCAACACAGTGAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTAGCTAATGTTGATGATGCTATTAGTGGCAAAACTGGTTCTTCCACCTTTCACTGA 1647 0.4396 MKNTIPGWDFESDTCLTNQRKPTGLDHELVELLWQNGQVVMHSQTNRKLPGNSSNLRQLQKTTQLNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYKPIRELEEEKFANIFSPGAPHHPPSPSQPLPSIMKSSCAQGLQENLMSAPGFHVPDSSQKINDFGASRKVLNFPHFSAPRNVSSPSQKTAVNLSQSEAREHSVITVGSSHCGSNHIPQDQDVNRVSSSGVWATTNNATLSAEPEAIDCIHRRFPRSERGKSEIIEPTVASSSGGSGSTGIGRTCSQSTREHDQKRKGTEQEALEEQSEATELKSADGNKLSQRSRRSRAAEVHNLSERRRRDRINDKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPKVGQAMSVTQPQPQPQPQPHMPNHNLLCQNPVLGAFNYQNQMQNQCLSEQYARYMGYHLMNSASQPMNALRYGSQAMQHSETMIAGSNNSSGPMSGTANVANVDDAISGKTGSSTFH 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01298 548 MobiDBLite consensus disorder prediction 264 349 - -
Vian7g01298 548 MobiDBLite consensus disorder prediction 272 293 - -
Vian7g01298 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vian7g01298 548 FunFam Basic helix-loop-helix transcription factor 330 393 - -
Vian7g01298 548 Pfam Helix-loop-helix DNA-binding domain 339 385 IPR011598 GO:0046983
Vian7g01298 548 Gene3D - 330 391 IPR036638 GO:0046983
Vian7g01298 548 PANTHER TRANSCRIPTION FACTOR PIF3 20 531 IPR044273 GO:0003700|GO:0006355
Vian7g01298 548 CDD bHLH_AtPIF_like 335 398 IPR047265 -
Vian7g01298 548 MobiDBLite consensus disorder prediction 294 349 - -
Vian7g01298 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 397 IPR036638 GO:0046983
Vian7g01298 548 SMART finulus 341 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01298 Vian-Chr7 21207839 21211553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01298 7 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 33.716 2.71e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g01298 HLH 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01298 K16189 - gmx:100811777 776.548