Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01278 ATGGAAAAACATGGTGAGGAAGAAGAGTATTCTCGCTACGATGTGTTCATTAGTTTCAGAGGGGAAGATATTAGGCACACCGTTCTACGGCAGCTCCGTGAAGGGTTGGGTAGGAGGGGAATACTCAGTTTCCATGATGACAGGGATATGAGGATAGGGACAGGTCTTTCACTTGCTCTGCGTGAGGCCATTGAAGAATCTAATGTTTTCATAGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTCGATGAACTTGTTAAGATTATCCAACGCACCCACGTGAACAGTACTGAGCAAATTTTTTTACTTCCAGTGTTCTACCATGTAGATCCCTCAGATATACAGAAATTGAGAAATAGTTTCGGAAAACACATGACGGCACACGAAAAAGAGTTTGGAAAAGAGTCGCAGAGAGTGCAGGCTTGGAAGTCTGCTTTGTCTGAAGCAGCTAACTTGCCAGGGATGCATATTACCCCCGGGTTTGAAAAAGATTATATTGAAGAAATTGTCGGGAAGGTGCAAAGGAATCTAGGTCGTAAACCTTTATATACTGGTCAGAACCCTATTGGACTTGAGCCCCACGTAGAAAAGGTTATGTCACTTTTGGACATTGATGACAACACTGTAAAAATGTTGAGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATAACAAAATTGTGCGACACTTTGATGCTGCAAGTTTTCTTGCCGGTGTTAGAGAAAAATCAAACACAATCAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTAGAGGAGTCGGAAACTACTAATAAAGGAATTTATGAAATAAAAGGAAAGCTTCGCCGAAAAAAAGTTCTTTTAGTTCTTGACGACGTTGATGATAAAGAAAAGTTAGAAAAGTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATCATCATAACGACAAGAGAAAGAGATCTCCTAATTGTTGGAAATGCTTATGAAATGAAGGAACTTGATGAACAACATTCTTTGGAGCTCTTTTGTTGGAATGCCTTCGGACAAGATTGTCCTAAAACTGGTTTTGAAGATGTGTCTATGCGTGCTGTAAATTACGCTAAAGGTCTTCCACTGGCTTTAAAAGTGCTAGGCTCTGATTTAGCTACTCTTCATGGAGGAAGCTTAGATGCTTGGGAAGATGCATTGGAAGAATATAAGAAGACTCCAAATAAAAAGATTCAAGATAATGTGCTTCAAGTATGCTACGATAGATTGGATGATGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAAAGTGGAATATGTGAACAAAATACTTAAGGAATTTTATTCAGAATCCAAAATGAAAGAACTTGTTAATAAATCTCTCATAACTATCGAGAATGGCTGCCTCAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTGTCAGGCAGGAATCACCAAATCCTGGTAAACGTAGCAGAATATGGGATTATGAAGATGTTCTTCAAATACTAACCGAAGATTCAGGAAGTGATAAGATTCAAGGGATTATGCTTGATCCTCCTCATCAAGAAAAGGTAAAATGGAGTGGTACTGAGTTTGAGAAAATGAAATGGCTCAGAATTCTCATTGTTCGAAACACATCCTTTTCATCTGAACCTGAACATTTACCAAATCATTTAAGACTGCTTGACTGGGACGACTATCCTTCTAAGTCTTTCCCACCAAAATTTCATCCAAAGAAAATCGTTGTTTTCAATTTGCCTAGAAGTTGTCTAACATTCCAAGAGCCCTTCAAGAAATTTCCGTGCTTGACTAAGATGGACTTTTCATATAACCAATGCATCATTGAAATACCTGATGTGTCCGAACTCCAGAATCTAAGAGAACTGAGAGTTAATCAATGTAGAAACCTAATTGCAATTCATGAATCAGTTGGATTTCTGAAAAGACTTGCTCATTTAAGTGTTTCGAAATGCACAAAGCTTCAAAATGTCATGTCCAGAATGTTTCTACCATCTCTAGAGGTCTTTGACCTTAATTTATGTGAAAGCCTTGGTCACTTCCCAGAGATAATGCAAGAAATGACCAAGTCACTGAAGATTAAAATGAAAAATACGGGTATTCAAGAGCTTCCAGAATCCATCAGTAATCTTACTGGGCTTGTTTCTATAGACATATCCAATAATAAGGAACTTAAGTATTTACCAAGGAGCGTATTCATGTTGCCAAACTTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATCTATCCCTTCGTGCATCAAGCAATGTGGTGACTGGACAAGTCTCGATTTGAATGGAAGCAAGAAGCTTAAAAAAATTTCTGAACCCACTAGCTTGAGAATTCTTGATGTTCATCATTGTTTAGACCTTGAAGAAATTTCAGAGTTGTCGTCTGCTGTTCAGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAGACATGCTATGGTCTCAGGTGAAGAAAGGGGTAGGAGGAATAGAAATGGTGATGCCATTTTTAACTGAGATTCCAGAATGGTTTAACTTTGTGGGGGTGGGAAGGATTCCTCGTTTCTGGGTTCGTGGCAAGTTCCCTAAGATTGTTGTAGCGATGATCTTCCACTTCCAAAATGAGAGTCAAAGGGACAGATATGATGGTCGTGGCCTTGTTGATCTGCGTTTACTAATCAACGGGCGATATGCTCCTCGAAAAGGGTATCGGAACTTTAGAATTGAGGCAGAGCACATCTTGTTGTGTGATGTAGGAGTTTTGTGCAGCGAGAAAGAGTGGGTTGGCAATGCAGTTATGGAGCATGAGTGGAATCTGGTGCAGGTTTCGTATGATGCGACGTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTTTGAAGAAGGAACGAATATGGAAGATCTCCTGTTCGCTAGTCCCAATAACTTGATTGTGAACGGAGATTCAACCTCTGTCCATGAGGGAAATTTGGAGGACGATGAAGACTACGTTGCTCTTCCGGAAGGAATAGCACCTGAATTCTTGTTTGAAGGAATAAAGGATGGAATTGTTGAGGCACGGAAAAAATTTCCTTCTATGGATGTTGCTGAAATCTGTGTGGCTGCCTTGAAGAAGAATCGTAGGATTGAATGGACAGTTGAAGGGATGGAGGATATACGCTCGGCTGAAAATAGGACGTACATGACTGGAGTTTACGGTGTACTCTTGGAAGCAAAACTCAGATTTCCTGATTTGGACGTTGGGGCAGCACTAACTACTGTGGCAAATAGGAAAGGGATTAAAGGAACTTTTAAATCACCCTCACAACAAAATCTGAGGATTCCACGATTCGATTGGAGTACAGTGACACTTCCTCCCTCTCACGACCCTCTCATGCAAATATTCATGATGATGATGAAGCAGCAAAATCCTTCGGAATCTGAGCTCAAAACTAAAACCTTCTGGAAGTTGAAGGAGAGCCACCAAATTCTCCGCAACAGATTATCACATATAACTGCTCCCCTGAACTCAGCCAGCTCTTCCAAAAATCAATATGACGAACTGATTCAGAAATTCAACATGCAATATGATGCGTTTGTTGGGAAGAGACTAGACAAGCTTTATCGTGTGGCAAAGTATGAGAGGGATAGTGTTGTTTTGAAAGAAAGAGCTGAAGAATTAGAGAGGCTATTCAATACTATGGTATGGCACCAAAAATCAGAGGAGTTTGGAGATGTAATGACTGCGATGTTCTTGAATGGACTCAGGGATGGAATCCTTGAAGCACGGGCCATCTTACTTGCTCTCCGTACGGACACACAAACTCATGAACGTGTCACCGATGAGGCTCCTAACAGTGAAAACATTGCCTAG 3924 0.4027 MEKHGEEEEYSRYDVFISFRGEDIRHTVLRQLREGLGRRGILSFHDDRDMRIGTGLSLALREAIEESNVFIVVFSENYASSTWCLDELVKIIQRTHVNSTEQIFLLPVFYHVDPSDIQKLRNSFGKHMTAHEKEFGKESQRVQAWKSALSEAANLPGMHITPGFEKDYIEEIVGKVQRNLGRKPLYTGQNPIGLEPHVEKVMSLLDIDDNTVKMLSIYGLGGIGKTELAKALYNKIVRHFDAASFLAGVREKSNTINGMEDLQKTLLSEMLEESETTNKGIYEIKGKLRRKKVLLVLDDVDDKEKLEKLAGGCDWFGPGSRIIITTRERDLLIVGNAYEMKELDEQHSLELFCWNAFGQDCPKTGFEDVSMRAVNYAKGLPLALKVLGSDLATLHGGSLDAWEDALEEYKKTPNKKIQDNVLQVCYDRLDDDAKQVFLDIACFFKGEKVEYVNKILKEFYSESKMKELVNKSLITIENGCLKMHDLIQDMGRQIVRQESPNPGKRSRIWDYEDVLQILTEDSGSDKIQGIMLDPPHQEKVKWSGTEFEKMKWLRILIVRNTSFSSEPEHLPNHLRLLDWDDYPSKSFPPKFHPKKIVVFNLPRSCLTFQEPFKKFPCLTKMDFSYNQCIIEIPDVSELQNLRELRVNQCRNLIAIHESVGFLKRLAHLSVSKCTKLQNVMSRMFLPSLEVFDLNLCESLGHFPEIMQEMTKSLKIKMKNTGIQELPESISNLTGLVSIDISNNKELKYLPRSVFMLPNLEELIVSENNFVSIPSCIKQCGDWTSLDLNGSKKLKKISEPTSLRILDVHHCLDLEEISELSSAVQKVDARFCFKLTKETSDMLWSQVKKGVGGIEMVMPFLTEIPEWFNFVGVGRIPRFWVRGKFPKIVVAMIFHFQNESQRDRYDGRGLVDLRLLINGRYAPRKGYRNFRIEAEHILLCDVGVLCSEKEWVGNAVMEHEWNLVQVSYDATSSLMISGWGAFVFEEGTNMEDLLFASPNNLIVNGDSTSVHEGNLEDDEDYVALPEGIAPEFLFEGIKDGIVEARKKFPSMDVAEICVAALKKNRRIEWTVEGMEDIRSAENRTYMTGVYGVLLEAKLRFPDLDVGAALTTVANRKGIKGTFKSPSQQNLRIPRFDWSTVTLPPSHDPLMQIFMMMMKQQNPSESELKTKTFWKLKESHQILRNRLSHITAPLNSASSSKNQYDELIQKFNMQYDAFVGKRLDKLYRVAKYERDSVVLKERAEELERLFNTMVWHQKSEEFGDVMTAMFLNGLRDGILEARAILLALRTDTQTHERVTDEAPNSENIA 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01278 1307 Gene3D - 342 430 IPR042197 -
Vian7g01278 1307 Gene3D Ribonuclease Inhibitor 539 714 IPR032675 -
Vian7g01278 1307 Coils Coil 1227 1247 - -
Vian7g01278 1307 PRINTS Disease resistance protein signature 683 699 - -
Vian7g01278 1307 PRINTS Disease resistance protein signature 214 229 - -
Vian7g01278 1307 PRINTS Disease resistance protein signature 377 391 - -
Vian7g01278 1307 PRINTS Disease resistance protein signature 287 301 - -
Vian7g01278 1307 Pfam TIR domain 13 160 IPR000157 GO:0007165
Vian7g01278 1307 Gene3D - 10 180 IPR035897 -
Vian7g01278 1307 Gene3D - 181 337 IPR027417 -
Vian7g01278 1307 SUPERFAMILY L domain-like 529 836 - -
Vian7g01278 1307 SMART till_3 12 155 IPR000157 GO:0007165
Vian7g01278 1307 ProSiteProfiles TIR domain profile. 11 184 IPR000157 GO:0007165
Vian7g01278 1307 SUPERFAMILY "Winged helix" DNA-binding domain 420 518 IPR036390 -
Vian7g01278 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 440 IPR027417 -
Vian7g01278 1307 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 704 IPR044974 GO:0006952
Vian7g01278 1307 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 157 IPR035897 -
Vian7g01278 1307 Gene3D Ribonuclease Inhibitor 715 844 IPR032675 -
Vian7g01278 1307 Pfam NB-ARC domain 195 415 IPR002182 GO:0043531
Vian7g01278 1307 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01278 Vian-Chr7 20889179 20895452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01278 13 765 WRKY Transcription Factor Family AT4G12020 32.360 3.23e-92 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01278 - - var:108338187 2560.41