Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01277 ATGGATGTGTCCAAGTTACATAACTCTGATGAAGAAGACAAGAAAGAAGACGAAGTTGTGCTTCCCGGCTTCAGATTCCATCCAACAGACGAAGAGCTTGTGGGCTTTTATCTCAGGCGAAAGGTGGAGAAGAAGCCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGCAAGTTCTGTGGGGGAGAAGGAGTGGTATTTCTTCTGCATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCTAACAGAGTGACAGGGTCTGGGTTTTGGAAAGCCACCGGGATTGATAAACCGATATACTGTGTTAAAGAACCCCATGAATGCATTGGGTTGAAGAAATCATTGGTTTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGGAAAATCCACCACTAACCCACAACCTAATGACATTCAAGAAGCTGAAGTGTGGACGCTATGTCGAATATTCAAACGAGTCCCATCTTACAAGAGGTACACACCAAATTTGAAAGACTCAAACACAGCACCAATCACGAAGCCAAACCCCACAAACTCTTCAAGTTCCAAAACATGCAGTTTAGAATCTGACACCGCCAAGCCATGTTTGACTTTCACAAACTCACCATCATCACTGCTCCTTCACCAAAACCAAATGATCAAACCAGTTTTCGGACATGTTGACCAACAGCCTACGACATCCTTTTCCTACTCGAGTTTTTGGAACCATCAGAATCTGGAATTGGCTCATGAGAATTGGGATGATCTCACTTCTGTCGTTCAGTTTGCTGTTGATCCGTCCAGGCTTTCTGATCACTGTAAAGAGTTTAATAGATTTTGA 894 0.4295 MDVSKLHNSDEEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSTTNPQPNDIQEAEVWTLCRIFKRVPSYKRYTPNLKDSNTAPITKPNPTNSSSSKTCSLESDTAKPCLTFTNSPSSLLLHQNQMIKPVFGHVDQQPTTSFSYSSFWNHQNLELAHENWDDLTSVVQFAVDPSRLSDHCKEFNRF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01277 297 ProSiteProfiles NAC domain profile. 20 177 IPR003441 GO:0003677|GO:0006355
Vian7g01277 297 Gene3D NAC domain 29 180 IPR036093 GO:0003677|GO:0006355
Vian7g01277 297 SUPERFAMILY NAC domain 19 176 IPR036093 GO:0003677|GO:0006355
Vian7g01277 297 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 247 - -
Vian7g01277 297 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Vian7g01277 297 MobiDBLite consensus disorder prediction 186 210 - -
Vian7g01277 297 FunFam NAC domain-containing protein 35 29 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01277 Vian-Chr7 20882181 20884379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01277 10 178 NAC Transcription Factor Family AT5G39820 59.893 1.67e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian7g01277 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01277 - - gmx:100784323 496.893