Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01269 ATGGTTGCTGTTAGGCAGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAACATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAATTGAAGAAGGTGAAGAAAAGCAATGGGCAAATGCTAGCCATTAACGAGGTGATGAAATTATGTATCCCTTCTAAAAACAGGAAGATGTTGGGTGAAATCAATTTTTTAGAAGAATCCTACCAAAAGAACTATGGAATTTGGCTGCGATATCAAAGTCGCACTGGTTATCATAATATGTACAAGGAGTACCGTGATACGACTCTGAATGGTACTGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGAGTGAGGCATCCATGCATCCAGATAATTAAGACTTGCACCATGCCTGCTAAGCTGTGCAAAAGGGAGAGTACCAAGCAGTTCCACAATTCTAAAATCAAATTCCCATTGGTGTTCAAGAAAGTTAGGCCCCCAACTAGGAGGCTCAAGACAACATACAAGGCATCCAGGCCAAACCTGTTCATGTGA 588 0.432 MVAVRQFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEVMKLCIPSKNRKMLGEINFLEESYQKNYGIWLRYQSRTGYHNMYKEYRDTTLNGTVEQMYNEMASRHRVRHPCIQIIKTCTMPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01269 195 PANTHER 60S RIBOSOMAL PROTEIN L18A 6 194 IPR028877 -
Vian7g01269 195 FunFam 60S ribosomal protein L18a 2 71 - -
Vian7g01269 195 FunFam 60S ribosomal protein L18a 90 164 - -
Vian7g01269 195 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 8 144 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vian7g01269 195 Hamap 50S ribosomal protein L18Ae [rpl18a]. 7 70 IPR028877 -
Vian7g01269 195 Gene3D - 2 70 - -
Vian7g01269 195 SUPERFAMILY RplX-like 90 163 - -
Vian7g01269 195 Gene3D - 91 164 - -
Vian7g01269 195 PIRSF Ribosomal_L18a 2 195 IPR021138 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01269 Vian-Chr7 20790422 20791770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01269 6 195 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 80.000 3.30e-109 310