Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01253 ATGCAGCAAGATCACAGAAAAAAGGGTTCAATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCATCGCTTGATACAATATCTCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTGCACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTACTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCATGCCAGCCTATTACAAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATCTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATAAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTACTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGCTTCCAGCAAAATCAGGCAAACAACTGAGGAATACAGCAATAATTCCAGGGATACAGAAAATCCTGTGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCAAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGAGCCCAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCTACTCCCCCTACGAATCATTATCAAAGATTAACCTCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGAGAAGTGTGTATCTTTACAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAACACCAGAAATAGCAATAAATATTGATTCCAACCCCTTTTTCATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGACCGAATAGCCATTGATACAAAGTTGCTACAAACAAAAGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGACCAGTACAGTATGGTATTACAAGGTTGTTCTAG 1836 0.3992 MQQDHRKKGSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFKKQFTHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIASSKIRQTTEEYSNNSRDTENPVPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYEPRTFMRGSVPPSQPTPPTNHYQRLTSGKQERSATEAEKCVSLQSKLAQQCCVNGQITPEIAINIDSNPFFMTRAGVNKIEQDDRIAIDTKLLQTKAHQYGGISTTAHRKVGPVQYGITRLF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01253 611 FunFam Mitogen-activated protein kinase 15 118 - -
Vian7g01253 611 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01253 611 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01253 611 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vian7g01253 611 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01253 611 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vian7g01253 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 367 - -
Vian7g01253 611 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vian7g01253 611 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vian7g01253 611 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vian7g01253 611 MobiDBLite consensus disorder prediction 496 520 - -
Vian7g01253 611 CDD STKc_TDY_MAPK 24 361 - -
Vian7g01253 611 FunFam Mitogen-activated protein kinase 111 339 - -
Vian7g01253 611 MobiDBLite consensus disorder prediction 417 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01253 Vian-Chr7 20684454 20689570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01253 1 434 MAP Kinase Gene Family AT2G42880 87.327 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vian7g01253 Pkinase 5.7e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00173 6 4658264 4661949 Vian7g01253 7 20684454 20689570 PCT