Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01238 ATGGAAACCAAGAAGCTTCAGCTTCGCTTCTCGCTCGGCCGGCAATCCTCCCTAGCGCCGGAGCGCGGCGGCGCGGGCGACCTGTCGGAGGCGCTGGATCCGACGGTTCGGTTGATGTATCTGGCCAACGAAGGAGACTTGGACGGGATCGAGGAACTTCTGGACGCGGGGAGCGACGTCAATTTCACCGACATTGACGGCCGCACCGCGCTCCACGTCGCCGCCTGCCAGGGACGCACCGACGTTGTTGACTTGCTACTCCGACGAGGCGCTGAAGTTGATCCGCGAGACCGCTGGGGCAGCACCCCTCTAGCTGATGCAATGTACTACAAAAACCACGACATCGTGAAGCTTTTGGAGAAACACGGTGCAAAACCTCCAATAACTCCCATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTCGATTTTACTAATAGTGTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAGGTTGCTGTCAAGACACTTGGGGAGGAAGTGTTCGCTGATGATGATAAAGTAAAAGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGCACCCCAATGATTATCGTCACAGAATATCTACCCCAGGGGGATCTTCGTGCCTACATGAAGCGGAAAGGTGCATTAAAACCAGTAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCGTATGTTTTACACACTCCTACCCTGTCTAGTTGA 861 0.5041 METKKLQLRFSLGRQSSLAPERGGAGDLSEALDPTVRLMYLANEGDLDGIEELLDAGSDVNFTDIDGRTALHVAACQGRTDVVDLLLRRGAEVDPRDRWGSTPLADAMYYKNHDIVKLLEKHGAKPPITPMHVENAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEEVFADDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEYLPQGDLRAYMKRKGALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSYVLHTPTLSS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01238 286 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 120 280 - -
Vian7g01238 286 SUPERFAMILY Ankyrin repeat 37 129 IPR036770 -
Vian7g01238 286 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Vian7g01238 286 PIRSF ILK 2 283 - -
Vian7g01238 286 Gene3D - 28 139 IPR036770 -
Vian7g01238 286 FunFam serine/threonine-protein kinase STY46-like 144 227 - -
Vian7g01238 286 Pfam Ankyrin repeats (3 copies) 38 126 IPR002110 GO:0005515
Vian7g01238 286 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vian7g01238 286 SMART ANK_2a 99 128 IPR002110 GO:0005515
Vian7g01238 286 SMART ANK_2a 32 62 IPR002110 GO:0005515
Vian7g01238 286 Gene3D Phosphorylase Kinase; domain 1 144 224 - -
Vian7g01238 286 SUPERFAMILY Protein kinase-like (PK-like) 156 281 IPR011009 -
Vian7g01238 286 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
Vian7g01238 286 Gene3D Transferase(Phosphotransferase) domain 1 225 285 - -
Vian7g01238 286 Pfam Protein tyrosine and serine/threonine kinase 168 278 IPR001245 GO:0004672|GO:0006468
Vian7g01238 286 PRINTS Ankyrin repeat signature 115 129 IPR002110 GO:0005515
Vian7g01238 286 PRINTS Ankyrin repeat signature 67 82 IPR002110 GO:0005515
Vian7g01238 286 FunFam Integrin-linked protein kinase family 17 142 - -
Vian7g01238 286 ProSiteProfiles Protein kinase domain profile. 151 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01238 Vian-Chr7 20557323 20559952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01238 9 279 MAP Kinase Kinase Kinase AT3G58760 69.759 1.40e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vian7g01238 PK_Tyr_Ser-Thr 3.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01238 - - gmx:100795964 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01238 7 20557323 20559952 Vian4g01697 4 33054214 33058819 PCT