Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01234 ATGGAGCCCAATTTGGGATATTCCAGGGTCTTCTGTTTACTCTTCCTTGCTTCAACTTCATTGATTTTCCTCTCACACTGGGCTTCTGCTGCCACTCCCAAGCTCAACAATCAAGAGATGAAGGCACTGAAGGAGATAGGGAGCAAGATTGGGAAGAAAGATTGGGACTTTGGAGTGGATCCTTGCAGTGGAAAAGGGAGTTGGAATGTTTCTGATGATAGGAAAGGCTTTCAGAGCACTGTGATGTGTGATTGTTCCTTCAATAACAACACTTCTTGCCATGTTGTAAGCATATTCTTGAAGGGTCAGAATCTGTCTGGTACTCTCTCACCAATGTTTTCCAAGCTTCAGTATCTCACAATATTAGACCTCAGTCGTAACATCATCACTGGTTCTATACCTCAACAGTGGAGTACCATGGGCTTGGTTGAGATCTCTTTCATGGGAAACAAATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATCACAACCCTCAGAAACTTGAGTATTGAAGGAAACCTATTTTGGGGTCACATTCCAACGGAGATTGAGAAGTTGGTCGATTTAGAAAAACTAGTTCTATCATCCAATGGATTCACAGGAGCATTGCCACCCTCGCTTTCCAAGTTGACCAAGTTGATTGATTTGAGGTTAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAACTGGACAGTGATAGAAAAGCTGCATATGCACGGTTGTTCTCTTGAGGGGCCAATACCTTCTAGCATTTCTGCCTTGACAAGACTAAGTGATTTGAGGATAACTGACCTAAAAGGTGATAAAACCTCAGCTTTCCCACCACTAAATAACTTGAAATCCATGAAGACATTGGTATTAAGAAATTGCAGGATTAAAGGAGAAATCCCAAAATATATTGGGAGAATGGAAAAACTGAAAAGCTTAGATTTGAGTTACAATAACTTGAGTGGAGAGATACCTGAATCTTTTGCCGAACTTGACAAAGTAGACTTCATGTATCTTACTGGGAACAAGTTATCCGGGACTATACCTGCATGGGTCCTTGGAAATAACAAAAATATTGATGTCTCTAACAATAATTTCTCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGCTGAAAGCTACTCTTCATCTGTAGATACACAAAATAAGATTCATTCATGCTTAAAAAGGAACTTCCCATGCCCTGCTTCAGTTAGCCAATATCAGTACGCCTTGAACATTAATTGTGGTGGTAAGGAAGCAAATATCAGTGGTCATATTTATGAAGCTGACGTTGAACGAAAAGGTGCTGCAATGTTATATACTGGCCAGGTTTGGGCTCTGAGCAGCACTGGAAACTTCATGGACAATGATATTGACTCTGATCCATACATTGTGGCCAATACTTCTAGACTTAATAATGTCTCTGCACTCAGCTCACAACTATACACAACAGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTTTGCCTAATAAATGGAAATTACACAATCAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGATCACTTAATAGTCTTGGAAAGAGGGTATTTGACGTCTATATCCAGGGGAATTTAGTGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTCAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATTCCCACAAGAGGAGTTTATGGACCCCTAGTTTCTGCTATTTCAGTAAGCCCTAATTTTAAACCTCCATCAAGGAAGGATGACAACAGAACTAATGTCATACTGGCAATTGGCATAGTTGCTGGTGTTTTAGTTCTTCTACTTCTGGGGCTGGTTTTTATGAGGTGGATGGGATGGTTAGGAGGCAAAGATCCAGTGTATAAAGAGCTTAGGGGTATCGATCTGCAGACGGGATTATTTACACTAAGACAAATCAAAGCAGCAACCAAAAACTTTGATGCAACAAACAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTGTCAGATGGTACAATAATAGCAGTAAAGCAGCTGTCTTCAAAATCCAAACAAGGAAACCGTGAGTTTGTGAATGAGATGGGATTGATATCTGGACTCCAACATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTAATACTGATATATGAGTACATGGAAAATAATTGTCTATCTCGGATTCTTTTTGGGAGGAATCCAGAGAGCAGAATAAAACTAGACTGGCCAACAAGGAAGAAAATTTGTCTTGGTATAGCTAAAGCTTTGGCTTACCTTCATGAAGAGTCCAGAATAAAAATCATACATAGGGATATAAAGGCAAGTAATGTGTTGCTCGACAAGGATTTTAATGCCAAAGTTTCAGATTTTGGCTTGGCAAAACTTATTGAAGATGACAAAACCCATATTAGCACTCGAGTAGCAGGAACAATTGGTTACATGGCTCCTGAGTATGCAATGCGTGGCTATCTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAACTGTCAGCGGAAAGAGCAATACAAATTTCAGGCCAACCGAGGATTTTGTTTATCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGGAGTCTTCTGGAGCTGGTTGACCCAGATTTGGGTTCAGAATATTCAACCGAGGAGGCCATGGTGGTGCTAAATGTGGCCCTCTTATGTACCAATGCATCTCCTACACTTAGGCCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGTTGGACTGATATTCAGGATCTACTTTCTGATCCGGGATATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAGAATCCTAGTAGAACACATAGCATGTCAATACCTAGTGTATATACTGATTCCTCTGGCTCTCATGTTGAAACAGAAAAGAGCTATCGTCTTGTAACAACAGTTAATTCAGATGGATCAGACAAGTCAAACTAG 3090 0.4084 MEPNLGYSRVFCLLFLASTSLIFLSHWASAATPKLNNQEMKALKEIGSKIGKKDWDFGVDPCSGKGSWNVSDDRKGFQSTVMCDCSFNNNTSCHVVSIFLKGQNLSGTLSPMFSKLQYLTILDLSRNIITGSIPQQWSTMGLVEISFMGNKLSGPFPKVLTNITTLRNLSIEGNLFWGHIPTEIEKLVDLEKLVLSSNGFTGALPPSLSKLTKLIDLRLSDNNFFGKIPDFISNWTVIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGDKTSAFPPLNNLKSMKTLVLRNCRIKGEIPKYIGRMEKLKSLDLSYNNLSGEIPESFAELDKVDFMYLTGNKLSGTIPAWVLGNNKNIDVSNNNFSWDSSSPTECQRGSINLAESYSSSVDTQNKIHSCLKRNFPCPASVSQYQYALNINCGGKEANISGHIYEADVERKGAAMLYTGQVWALSSTGNFMDNDIDSDPYIVANTSRLNNVSALSSQLYTTARVSPLALTYYGLCLINGNYTIKLHFAEIIFINDRSLNSLGKRVFDVYIQGNLVLKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVSPNFKPPSRKDDNRTNVILAIGIVAGVLVLLLLGLVFMRWMGWLGGKDPVYKELRGIDLQTGLFTLRQIKAATKNFDATNKIGEGGFGCVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGRNPESRIKLDWPTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPDLGSEYSTEEAMVVLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSIRNHFWQNPSRTHSMSIPSVYTDSSGSHVETEKSYRLVTTVNSDGSDKSN 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01234 1029 Gene3D - 413 608 - -
Vian7g01234 1029 ProSiteProfiles Leucine-rich repeat profile. 310 332 IPR001611 GO:0005515
Vian7g01234 1029 Gene3D Transferase(Phosphotransferase) domain 1 757 965 - -
Vian7g01234 1029 SMART serkin_6 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01234 1029 CDD STKc_IRAK 687 955 - -
Vian7g01234 1029 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Vian7g01234 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 235 383 - -
Vian7g01234 1029 SUPERFAMILY L domain-like 83 367 - -
Vian7g01234 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Vian7g01234 1029 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
Vian7g01234 1029 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 41 204 - -
Vian7g01234 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase 757 965 - -
Vian7g01234 1029 Gene3D Ribonuclease Inhibitor 36 271 IPR032675 -
Vian7g01234 1029 Pfam Protein tyrosine and serine/threonine kinase 684 952 IPR001245 GO:0004672|GO:0006468
Vian7g01234 1029 ProSiteProfiles Protein kinase domain profile. 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g01234 1029 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 651 756 - -
Vian7g01234 1029 Pfam Malectin domain 418 603 IPR021720 -
Vian7g01234 1029 SUPERFAMILY Protein kinase-like (PK-like) 665 983 IPR011009 -
Vian7g01234 1029 Gene3D Ribonuclease Inhibitor 272 381 IPR032675 -
Vian7g01234 1029 Gene3D Phosphorylase Kinase; domain 1 655 756 - -
Vian7g01234 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 416 608 - -
Vian7g01234 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01234 Vian-Chr7 20534625 20543993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01234 217 1017 Receptor kinase-like Gene Family AT1G07650 66.295 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian7g01234 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01234 - - vun:114195543 1941.39