Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01232 ATGGTTCAACCAAGTAATATAAATCCCCTATCATCCACCCCACTTTCTTCCTCCGATGACAACACCTTTTATGATGTTACTGATTCATCCACTCATCCAAAATCCCCCTCCTCCTCATCATCATCAAAGAGGACACGCGGTAGGCCTGTGGGCTCCAAGAACAAACCAAAATTAACCCTTGTGATTGACCAAGACAACAAGCATACCCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTGAGGCATTGATCCAATTCGCCTATGATTACCAAATTAGCATCACGGTGCAAAGTGCTTCAGGATCTATTATGAACGTCACTCTCCGTCGTGATAGTGAATCCACAACTTCTACATTCATTGTTCATGGACCCTTCACATTAGTTTCCCTCATTGGCACTTGCATAAATAACAACTCTTGTACTGTTTCATCACTGTCTAATCTTGACATTGATTGTTTTTTTAACATTTCCTTTTGTTCAAATATAGGTCAAAGCTTTATTGGAGTTGTTGGAGGGAAGATTATCGCAGGTGATGATGTTGTTGTAGCAGCTACTATTTTGAATAGCTTTGAGAATAACAAAAGTGAAAATCAATTATGA 612 0.384 MVQPSNINPLSSTPLSSSDDNTFYDVTDSSTHPKSPSSSSSSKRTRGRPVGSKNKPKLTLVIDQDNKHTQKPIFIQIPKNSDVIEALIQFAYDYQISITVQSASGSIMNVTLRRDSESTTSTFIVHGPFTLVSLIGTCINNNSCTVSSLSNLDIDCFFNISFCSNIGQSFIGVVGGKIIAGDDVVVAATILNSFENNKSENQL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01232 203 MobiDBLite consensus disorder prediction 1 47 - -
Vian7g01232 203 CDD DUF296 71 190 IPR005175 -
Vian7g01232 203 Gene3D - 71 202 - -
Vian7g01232 203 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 189 IPR005175 -
Vian7g01232 203 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 191 - -
Vian7g01232 203 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 191 IPR014476 GO:0003680
Vian7g01232 203 MobiDBLite consensus disorder prediction 1 62 - -
Vian7g01232 203 ProSiteProfiles PPC domain profile profile. 67 203 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01232 Vian-Chr7 20517743 20518354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01232 43 203 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.037 9.27e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01232 - - var:108336502 359.377