Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01231 ATGGGGAAAAATGAGTTTCTCACACCAAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGATGGTATTGCCAGATGTGCCAGAAGCAGTGCCGAGATGAGAATGGATTTAAATGCCATTGTATGAGTGAAGGACATCAGCGACAAATGCAAATTTTTGGACAAAACCCACACCGTATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGCTCATTTCTAGAGCACATGAAGCGCAGTCATCGATTCAGCCGTGTCGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGGCACCATGTTCATATGAACTCCACCCAGTGGGCAACTCTTACTGAATTTGTCAAGTACTTGGGTCGAACTGGCAAATGTAAGGTCGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCAGAAAACAGATTGAAATGGCTGAGCAAATGATGCAGCAGCCTACTCCTGAGGCTGATGAGCCTTCACAATCTGAGCCTCCAAGGGAACTAAATATGGAAGATGGAATTAAGATAGGGTTTTCTCTTGGGTCTTCATTGGTTAAACAACCTGTGACCAAGGAAAAACGTGAGGCATCAAGGGTGGTGTTTGAGGAGGCTGATGAAGAGAAATATGGGGAAAGAAATCCTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGAGGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATCAACCGGAAGGATTACTGGTTGCACCAGGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCAGAGAAGGGCTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGGTTGACAAGTATGTTGGGGAAATAGAAATTCTTGAAAGTAAGCATGTGCTCAAAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGTGGCCGTGTTAAAATTGTCAACGGCGCGTATAGAGGATCAATTGCTAAGTTGTTGGGCGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATCGAGAAAGGACCCTATGATGGCAGAGTGCTTAAAGCTATGGAATACGAGGACATTTGTAAACTAGCCTATGGCAGTCTGAATTCTGTGCTCCGGAGATGCGATAATAAGGTGTATTTTGCACGCCAAGCATCTTCTTCTCTTGGTTATTTTATGAGGCAAACTTCAATTGAAGAGGGTGGCTCAACTTTTGCTCCTGAAACTCATCATGGTGCTGGTGCTGCATCTGAATGCGCTTCTAATGCAACAGCACCCTGTTTTGCTAGCCTGCGGCCAAACAGACAGACTAGAGGAGATCTGTTACATTCTGAGAAGAAAACGTGCTATTCTGAAATTGGTGGAATTGAGTGGTCTCCAAGGATGGATGTTGCAGAATCAGAAGCAAATATGTCATTCCAGTGGAAGTTCCAGGTAGACGCTCTACAAGCTCTTGGACAATTGCTAGTTGTCCAAATGCTTCATTTTCTTCATACCATCGGAGGGAAATATTATATGGACCATATGAGGTGCTGTGGCAACTTTCTTCTGTTAGATCATGATGAAGTTCAAATATATGTGTTTTACCTTTATACATTTGAAGCTGATGATTTGCTGTTTCTTTCTCCAATTTCAGGGATGGACTTCTACAAATCGTAG 1764 0.424 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEMAEQMMQQPTPEADEPSQSEPPRELNMEDGIKIGFSLGSSLVKQPVTKEKREASRVVFEEADEEKYGERNPGNNLKRKESGGGKSTLEEMMRDEEKKKEKINRKDYWLHQGIVVKVMSKVLAEKGYYKQKGVVRKVVDKYVGEIEILESKHVLKVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDICKLAYGSLNSVLRRCDNKVYFARQASSSLGYFMRQTSIEEGGSTFAPETHHGAGAASECASNATAPCFASLRPNRQTRGDLLHSEKKTCYSEIGGIEWSPRMDVAESEANMSFQWKFQVDALQALGQLLVVQMLHFLHTIGGKYYMDHMRCCGNFLLLDHDEVQIYVFYLYTFEADDLLFLSPISGMDFYKS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01231 587 Coils Coil 262 282 - -
Vian7g01231 587 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vian7g01231 587 FunFam DNA/RNA-binding protein KIN17, putative 343 399 - -
Vian7g01231 587 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
Vian7g01231 587 MobiDBLite consensus disorder prediction 237 270 - -
Vian7g01231 587 Gene3D - 289 342 - -
Vian7g01231 587 CDD KOW_KIN17 345 398 IPR041995 -
Vian7g01231 587 MobiDBLite consensus disorder prediction 184 203 - -
Vian7g01231 587 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Vian7g01231 587 Gene3D - 343 399 IPR014722 -
Vian7g01231 587 Coils Coil 154 186 - -
Vian7g01231 587 SMART Kin17_mid_2 52 178 IPR019447 -
Vian7g01231 587 Pfam KN17 SH3-like C-terminal domain 281 334 IPR041330 -
Vian7g01231 587 Gene3D - 60 160 IPR038254 -
Vian7g01231 587 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vian7g01231 587 FunFam DNA/RNA-binding protein kin17-like 289 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01231 Vian-Chr7 20510681 20513973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01231 1 399 C2H2 Transcription Factor Family AT1G55460 68.182 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01231 K13102 - gmx:100785931 748.814