Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01214 ATGCCCATTGCCACCACTTCTCTCACTGTCACCGACTGGTTTTCTGAAATGGTAGAAACAGTAACCGCAAGTTTCAAGCATCTTTGTAATGGTGGTTCTGCAGTTGGGCTATTCATGAAGGCTTTCGAGAGAGTTCTTTTTGCCTTATTTACTTGCATTGTGGCACTTGGAGGGTCAATAGTGGGAACAATTGCAGGAGGCATAAAAGGGCAGACCACAGAAACTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAATCACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGACTCTGCTGCTGATGAGCCAGTGTCTAAGTTTGCCCTGTTGAGAAGTTTATTGAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGTTGCATGTAACAATTAACACACTGGAAACAATATACCAAGAAGTATCAGACATTTATGATATCAGGGGAGCAAGAGGGGTACCCCAGAATGTGATTATGAAGCTTCAATTTCAGCCATTCAACTCTGGAAAAATGTCCAAGTTATACAACATGTCTTGCTGCTCAATTTGCTTCCAAGAGTTTGAGGATGGAGAATTGGTGAGGATACTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTTAA 717 0.4226 MPIATTSLTVTDWFSEMVETVTASFKHLCNGGSAVGLFMKAFERVLFALFTCIVALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDSAADEPVSKFALLRSLLNGKVFMEWICPAVAKLYQLHVTINTLETIYQEVSDIYDIRGARGVPQNVIMKLQFQPFNSGKMSKLYNMSCCSICFQEFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01214 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 236 IPR013083 -
Vian7g01214 238 SUPERFAMILY RING/U-box 187 234 - -
Vian7g01214 238 Pfam Ring finger domain 188 230 IPR001841 -
Vian7g01214 238 CDD RING-H2_EL5-like 187 230 - -
Vian7g01214 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 38 231 IPR044523 -
Vian7g01214 238 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Vian7g01214 238 SMART ring_2 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01214 Vian-Chr7 20355611 20357261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01214 48 233 C3H Transcription Factor Family AT5G66070 37.186 6.88e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01214 - K19041 gmx:100305612 379.407