Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01179 ATGGTTGAAGCCGTAACAATTGAAGAAAGGCCAAAGTCCAGAGATATTAGACGTTATTTCTGCCAGTACTGCGGTATCTGCAGATCCAAGAAAACCCTAATTACCTCTCACATCAATTCGCAACACAAGGAAGAGGATGAGAAGGCTAGAAAAGAAACAGATCCTGAAACGGAGTCTTCAAAATCCAACACCTGCGAGGAATGTGGTGTCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCACTCGCCTGAGCATTGGATCCCAGACAACGAACTCCAAAATGCACGAGGCAACGAGTTTAGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCTCTTTGAATTTGAGGAGGCCGTTTGTGTGTACTGTTGATGATTGTCATGCGAGTTACCGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACATTCAAGTGCCCTGTTGTGAACTGCAACATTGAGTTCTCTTTGCAAGGCAATATGCAAAGACACGTTGAGGAGATTCACGATGGCAGTTCCACTGCCGCCGCTGACAAAAGTCACAAACAACATGTGTGTCCAGAGATTGGCTGTGGAAAGGGTTTCAGATTTGCTTCACAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGAATCAATAGAGGTGGTGTGCTTAGAACCTGGTTGCATGAAGCATTTTGCTAATGTCCAGGGCCTTAGAGCTCATGTAAATACCTCCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTGACAGCAGTTCCTCGAAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTAAAGAAAAACCTTTTCGGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTCGGTGATTTTGAAGAAGCTGATGCAGAATTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAGAATGTCCTACTATTGAAATGTTAATCAGGAAGAGGGTTACCCCACCCAGTAAATTGGAGGAATGGTTATTTATGCAGGACAGAGAGTAG 1218 0.4409 MVEAVTIEERPKSRDIRRYFCQYCGICRSKKTLITSHINSQHKEEDEKARKETDPETESSKSNTCEECGVTFKKHAYLLQHMQSHSPEHWIPDNELQNARGNEFRLDGSVSGRETSCEAPSRMPQSRSLNLRRPFVCTVDDCHASYRRKDHLTRHLLLHEGKTFKCPVVNCNIEFSLQGNMQRHVEEIHDGSSTAAADKSHKQHVCPEIGCGKGFRFASQLKKHEDSHVKLESIEVVCLEPGCMKHFANVQGLRAHVNTSHQYMTCDICGSKQLKKNIKRHLRSHEADSSSSKTFQCEFKGCSCTFSKKSNLDKHKKAVHLKEKPFRCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADAEFRSRPRGGRKRECPTIEMLIRKRVTPPSKLEEWLFMQDRE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01179 405 Pfam Zinc finger, C2H2 type 204 228 IPR013087 -
Vian7g01179 405 Pfam Zinc finger, C2H2 type 135 159 IPR013087 -
Vian7g01179 405 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vian7g01179 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 194 IPR013087 -
Vian7g01179 405 SUPERFAMILY beta-beta-alpha zinc fingers 162 190 IPR036236 -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Vian7g01179 405 Gene3D Classic Zinc Finger 290 356 - -
Vian7g01179 405 Gene3D Classic Zinc Finger 201 286 - -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 297 320 IPR013087 -
Vian7g01179 405 Gene3D Classic Zinc Finger 3 91 - -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 328 352 IPR013087 -
Vian7g01179 405 Gene3D Classic Zinc Finger 161 200 - -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 137 159 IPR013087 -
Vian7g01179 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Vian7g01179 405 SUPERFAMILY beta-beta-alpha zinc fingers 132 161 IPR036236 -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 238 261 IPR013087 -
Vian7g01179 405 ProSitePatterns Zinc finger C2H2 type domain signature. 206 228 IPR013087 -
Vian7g01179 405 MobiDBLite consensus disorder prediction 38 61 - -
Vian7g01179 405 SUPERFAMILY beta-beta-alpha zinc fingers 279 334 IPR036236 -
Vian7g01179 405 PANTHER ZINC FINGER PROTEIN 8 394 - -
Vian7g01179 405 Gene3D Classic Zinc Finger 125 160 - -
Vian7g01179 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 233 IPR013087 -
Vian7g01179 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 164 IPR013087 -
Vian7g01179 405 SMART c2h2final6 164 189 IPR013087 -
Vian7g01179 405 SMART c2h2final6 135 159 IPR013087 -
Vian7g01179 405 SMART c2h2final6 264 285 IPR013087 -
Vian7g01179 405 SMART c2h2final6 63 85 IPR013087 -
Vian7g01179 405 SMART c2h2final6 295 320 IPR013087 -
Vian7g01179 405 SMART c2h2final6 236 261 IPR013087 -
Vian7g01179 405 SMART c2h2final6 204 228 IPR013087 -
Vian7g01179 405 SMART c2h2final6 19 42 IPR013087 -
Vian7g01179 405 SMART c2h2final6 326 352 IPR013087 -
Vian7g01179 405 MobiDBLite consensus disorder prediction 38 63 - -
Vian7g01179 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 325 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01179 131 355 C2H2 Transcription Factor Family AT1G72050 50.181 9.31e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian7g01179 zf-C2H2 0.0015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01179 K09191 - gmx:100801812 629.017