Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01178 ATGGAACCCTCTTCCAATCATGACACTGCTCACCCTTCTTCACATCCATTCATGTCCTTCACAGGACACCATTCCTCATGGATGCCCTCGATTTCTTCCCTCACAAGAACCAGTTTGGATCTCCTTACCAAGAACACAGGTGGCAACAGACCAGTTGAAGAAAATGATGCTTTGGAAACTATGGATGAAAAGAGGTTTGTAGCTTTGGTAACTGAATTGCATCAAGTGAATGCTGAAAATCAAAGATTAAGAGAGTTGATCGATCAGATGAACAATAACAGCAACGCCGTACGCATGCAACTTATCAAGATAACGCAGAAGCAGCATAACCTACGGAAGAATGGAGTGGATGGAGAGAAAGAAGAGATGGTTCCGAGGTCATTTTTAGACATTGGTGTGGCTGAAAAGGATGAGGCTTCGCAGCAACCCTCAGAGGAAAAACTCAGAGAGAGCAAAAGCGTGGTTGATTTGATGCATCGGTGTAAGGGTAATGAGAAAGATGTTGAAGATAAGTTGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAGGTGACCAAGAACTTTCTAACAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTGTCAGTTCGAGCAAGATCAGACTCCACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGGGCCTATTATCGTTGCACAATGAGTACAGGCTGCCCAGTGCGTAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGTTGATCACTACATATGAAGGACAGCATAACCATCCACTTCCTCCCACAGCTCAGGCAATGGCCTCAACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAACCATTTTGGAAAATGCTTCACTTCCATGCTCTCAAAACATGGCAACTCTCTCTGCCTCAGCTCCATTTCCCACCATCACTCTCGATCTCACTCAAAATCCTACCAATTCCTCACACCACCAAAGGGATCCACACAACCAACTTAGCCTCCTTTCTCCCCTTTTGGCTCAGAAGTTCATGTCAGTTCCAAAATTATTCGGACACTCACTGTGTGATCAAACTAAGCTTGCTGGCTTACATGAATCTCAGGGAATGGACGCTGCAGCTCCATCGTTTTCTAACTCACTGAATGCAGCAACTGCTGCTATCACTGCAGACCCCAATTTCACTGCTGCACTTGTGGCAGCCATAACATCTGTCATGGGAAGTTCACATTCAAACACCAGTGGCACCAGTAATACTACTGGCGATCACCACTGCAATAATAATGCATGA 1377 0.4481 MEPSSNHDTAHPSSHPFMSFTGHHSSWMPSISSLTRTSLDLLTKNTGGNRPVEENDALETMDEKRFVALVTELHQVNAENQRLRELIDQMNNNSNAVRMQLIKITQKQHNLRKNGVDGEKEEMVPRSFLDIGVAEKDEASQQPSEEKLRESKSVVDLMHRCKGNEKDVEDKLDCGRESSKARMEGDQELSNKVPKLDQNSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILENASLPCSQNMATLSASAPFPTITLDLTQNPTNSSHHQRDPHNQLSLLSPLLAQKFMSVPKLFGHSLCDQTKLAGLHESQGMDAAAPSFSNSLNAATAAITADPNFTAALVAAITSVMGSSHSNTSGTSNTTGDHHCNNNA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01178 458 SMART WRKY_cls 222 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01178 458 MobiDBLite consensus disorder prediction 437 458 - -
Vian7g01178 458 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 445 IPR044810 GO:0003700
Vian7g01178 458 Gene3D WRKY domain 207 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01178 458 FunFam probable WRKY transcription factor 31 207 284 - -
Vian7g01178 458 SUPERFAMILY WRKY DNA-binding domain 215 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian7g01178 458 ProSiteProfiles WRKY domain profile. 217 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01178 458 Pfam WRKY DNA -binding domain 224 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian7g01178 458 Coils Coil 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01178 Vian-Chr7 20088353 20090717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01178 37 444 WRKY Transcription Factor Family AT1G62300 46.171 8.47e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian7g01178 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01178 - - vum:124848283 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00176 6 4768295 4771162 Vian7g01178 7 20088353 20090717 PCT