Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01172 ATGCGGAAGGGAAGAGGAGGGGCGGCGTCGGTGGTCACGGCGGCGGCTGCCGCAGCCAACGGATCCCTTTTAAAGGAGCCTCGGTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCACGGACTCTCCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGCTATCCGCACCCCACCACCAGTCCTCTCTTCTACGCGGGTTTCAACGACAACAACAACCACATCAGCAACCTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGTAGCACCGTCGAGTCTTTCAGCGGGCCACGCCCTCCCACAGCCGCCGGCGCTTCCGCGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTCGTCCCCGAAGACTGCCACAGCGACTGCGACTCTTCCTCCTCTGTCGTCGACGACGGTGACAACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCCTTTGATCTCAACGCGCCGCCGTTCGACGATGCCGCTGCCGATGACGATCTCCGCTGCACCGCGCTCTGCCTCTGA 657 0.624 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDNNNHISNLNNPQRPTSSGMSSTVESFSGPRPPTAAGASATPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPPFDDAAADDDLRCTALCL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01172 218 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Vian7g01172 218 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 MobiDBLite consensus disorder prediction 112 185 - -
Vian7g01172 218 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Vian7g01172 218 MobiDBLite consensus disorder prediction 112 135 - -
Vian7g01172 218 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 183 - -
Vian7g01172 218 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vian7g01172 218 MobiDBLite consensus disorder prediction 169 183 - -
Vian7g01172 218 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01172 Vian-Chr7 20041177 20041833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01172 1 218 AP2-EREBP Transcription Factor Family AT1G50640 58.898 1.50e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian7g01172 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01172 K09286 - gmx:100803943 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01172 7 20041177 20041833 Vian7g01172 7 20041177 20041833 ECH
Vian6g00404 6 17352498 17353121 Vian7g01172 7 20041177 20041833 PCT