Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01167 ATGAGTCTTCTTCCCATATTGTTTATTAGTTGTTTCTTTTGTGTTGGTAAAGCCAAAGACTGTGGTGGAAATATTGTTACAAAAACCATCATTGTCGGTAAAGATGGGCACGCAGCATTCAGTACAATTCAAGCTGCCATTGATTCTGTAAGAAGTAACAATGATCAATGGGTAAAGATTCACATAAAAGCAGGCTTGTACATAGAAAGTGTTGTTATACCTATAAACAAGCCATGCATTATTTTAGAAGGAGAGGGTACCCCAAAAACAATCATTAGTCACTCCGACCACCAGTCCTTAAACAATAAAGCTACCTTACTTCCTTTTGCACCCAACTTGCTTGCAAGTGGCATTACTTTCAAGAACTCATATAATGTGGCCACAACAAAATATAAATCTTACGATGAGGTAAGCAAAACCGAACCAGCAAATGCAGCAAGACTATTTGGAGATAAATATTTCTTCCATAACTGTAGTTTTATAGGTTATCAAGACACTCTATATGATCATTCGGGACGTCATGTTTTTAAAGATTGTTACATTCAGGGTGAAATTGACTTTATATATGGCAACGGACAATCCTATTATCAGAACTGTTTGGTCTATGCTGTGGGAAAATTTCAAAACTTAGCAGGCTATGTGACAGCTAATGGAAGAGAGTCAGCAGATGATCCTAGTGGTTTTGTATTTGAAGGAGGTTCCATTATAGGGAATGGAGCACGACCACTTATGCTGAAGTTCTGTAAGGGACCAGGAGCTGACACTTCGAACCGTGTTGAATGGATGAAGAAACTAAGTTCTTCGGATTTGAAGAATAAATTTTCTTTTGCATCTTTTATCAACAGTGATGGATGGAACTGTTTGATCAATGCTGTGGGGAGAGCTCCAAATTTTCCAGGTTTTGTGACAGCTCAGGGAAGAAATTCAGCCGATGAAACCAGTGGTTTTGTATTTGAAGGAGGTTCCATTATAGGAAATGGTAAAGTGAATTTAGGAAGACCATGGCGACCCTATGCAAGAGTCATATTTAAAAATACATATTTTTCTGACATTGTAACTCCTCAAGGATGGAGTGCTTGGAGACCTGGTAGCGATCCTTGTTTCTTTTGTCATGGTAAAGGCACAGACTGTGGTGGAAATAATGTTACAGAAACCATCATTGTTGGTAAACAGGAGGACGCAGCATTTAGTACAATTCAAGAGGGCATTGATTCTGTAAAAAATAACAATGATCAATGGATCAAGATTCATATTCAGGCAGGCTTATACATAGAAAGGGTTACTATTCCGAAAGAAAAGCCATGTATAATTTTAGAAGGAGAAGGTAGTTCGACAACAACCATCAGTTACTCAGACCACATATCAATAAACTATAACGCTACGTTTACTTCTTTACCATCCAATGTGGTTGCAAGTGGAATTACTTTCAAGAACTCGTATAATGTGGTAACTAAAAGATACAAATATTACCCTGTGGGAAGCGAAATCGAACCAGCAAATGCAGCAAGACTGCATGGAGATAAATATTTCTTCTATAATTGTAGTTTTTTGGGTTATCAAGACACTTTATATGATCAATATGGACGTCATTACTTCAAAGATTGTTACATTGAAGGTGAAGTGGACTTTATATATGGTAGTGGACAATCTTACTATGAGAACTGTAGGATAAATGTATTGGGAAGATTTTCAGATTCTGCAGGCTTTGTGACAGCTCAGGGACGAAGTTCATCAGATGATCCAGATGGTTTTGTATTTGAAGGAGGCTTCCTTGGTGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGCAACCCTATTCAAGAGTCATATTTCATAAAACATATTTTTCTTCCATTGTAACTCCTCATGGATGGAGTGCTTGGCATTATGCAGGCAATGAGAGTGGAATCACTTATGTTGAAGTTGATTGTGGAGGACCAGGAGCTGATACCTCAAATCGTGTTTCATGGATGAAAAAGCTAAATACTTCAGAAATAGAACAATTTTCTTTAGCATCTTTTATTAATAAGGATGGATGGGTTGACAACTTACCAATACAATCCTCCTAA 2070 0.3749 MSLLPILFISCFFCVGKAKDCGGNIVTKTIIVGKDGHAAFSTIQAAIDSVRSNNDQWVKIHIKAGLYIESVVIPINKPCIILEGEGTPKTIISHSDHQSLNNKATLLPFAPNLLASGITFKNSYNVATTKYKSYDEVSKTEPANAARLFGDKYFFHNCSFIGYQDTLYDHSGRHVFKDCYIQGEIDFIYGNGQSYYQNCLVYAVGKFQNLAGYVTANGRESADDPSGFVFEGGSIIGNGARPLMLKFCKGPGADTSNRVEWMKKLSSSDLKNKFSFASFINSDGWNCLINAVGRAPNFPGFVTAQGRNSADETSGFVFEGGSIIGNGKVNLGRPWRPYARVIFKNTYFSDIVTPQGWSAWRPGSDPCFFCHGKGTDCGGNNVTETIIVGKQEDAAFSTIQEGIDSVKNNNDQWIKIHIQAGLYIERVTIPKEKPCIILEGEGSSTTTISYSDHISINYNATFTSLPSNVVASGITFKNSYNVVTKRYKYYPVGSEIEPANAARLHGDKYFFYNCSFLGYQDTLYDQYGRHYFKDCYIEGEVDFIYGSGQSYYENCRINVLGRFSDSAGFVTAQGRSSSDDPDGFVFEGGFLGGNGKVNLGRAWQPYSRVIFHKTYFSSIVTPHGWSAWHYAGNESGITYVEVDCGGPGADTSNRVSWMKKLNTSEIEQFSLASFINKDGWVDNLPIQSS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01167 689 SUPERFAMILY Pectin lyase-like 26 286 IPR011050 -
Vian7g01167 689 Gene3D - 23 285 IPR012334 -
Vian7g01167 689 Gene3D - 382 689 IPR012334 -
Vian7g01167 689 SUPERFAMILY Pectin lyase-like 384 685 IPR011050 -
Vian7g01167 689 FunFam Pectinesterase 380 685 - -
Vian7g01167 689 SUPERFAMILY Pectin lyase-like 286 366 IPR011050 -
Vian7g01167 689 Gene3D - 286 381 IPR012334 -
Vian7g01167 689 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 286 367 - -
Vian7g01167 689 Pfam Pectinesterase 386 677 IPR000070 GO:0030599|GO:0042545
Vian7g01167 689 Pfam Pectinesterase 286 362 IPR000070 GO:0030599|GO:0042545
Vian7g01167 689 Pfam Pectinesterase 30 238 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01167 Vian-Chr7 19971658 19995236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01167 376 634 Carbohydrate Esterase AT2G19150 45.802 9.33e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01167 - - var:108336510 1438.71