Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01149 ATGAGCGAGGTTTCGAGGGTGACAGGCTCCTATGCAAATGGAGTTCTCCCTCAATCTCCTATGTACACCAGCCCCGTCACCAACACCTTCTCATCGCCGGAAATTAGGCGTTGCTGCTGCTCCTCCACTCCCTCCGCATTCGCCACTCCGTCGAAGCGTCGCTCTCCATTCGCCTCCACACATACCATTGATGCACGAGTCTTCTCCGGATTGAGCAATCCGGAATGGGGCATGAAGAAGCATGAAGATGGAAATGGAGGTGTTTTGCGGCACACGTGGAAGAAAAGAAAGGAGGACAACGTTGGACAGGTTGAGCTTCGCAGCCTGAAATCAAAAGTAGGTTCATTTCATTGCTTCCCTGTAATGGGCCTTCTGTTTGAGACTTTAAAGAATCAGAATGGTAAAGTTACGTTTGGAGATTTGCCACCTTTGATGGTGAAGGTAAACGCATTCAGAGGCATGTACAGTGAGGATGAGATTAGGGGGATCTTGGGGGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAATGTTCTTAAAGTCATATTTGAATTTGCAAAGCCAAGCTACTGCAAAACAGGGTGGTAGGAGGCACTCCTCGTCATTCCTCAAGGATACTGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGTTACGTTGCCCACATAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGAACCCAGCTTCAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAACTCATCAATGTTGCTGTTCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACGCAGTCCTAGTCTTTGGGAGGTCAACGAGAACCATACCCTATGCCTCAACTCCGCTAAGGCTATTGGCTGCACAGTGGTTAACATTGGTGCACAGGATTTGGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAACTTGTGGAATTGGCTGATGACGGTGAGGATATCGAAGAGCTTCTTAATTTGTCTCCCGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGATACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAATCCAGCCACCTTAGATATCAAGGATGCCAATGAAAGGGCAAATATGGTCATTGATCATGCAGAGAAAATGGGCTGCAAAAGATACTTGGCCCCGAGGGATGTTGCTGAGGGTACTTCGAATTTGAATCTTGCATTTGTTGCACAACTGTTTCATCACAGGAGTGGTCTGTCCACAGACACTAAAAAGATTTCCTATGCTGAGATGATAACTGAAGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGACTGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGGTACTTTTAGAGGTGTTAGACAAGATTTTTCCCGGATCAATTAACTGGAAACAGGCGACAAAACCTCCAATTAGAATGCCCTTCAGAAAAGTAGAGAACTGCAATCAGGTCATAGAAGTTGGTACACAACTGAGATTCTCACTAGTCAATGTATCTGGAAATGACATTGTGCAAGGAAATAAGAAGCTTATTCTTGCTTTATTGTGGCAGCTGATGAGGTTTACTATGCTTCAACTGTTGAGAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGGGATGCAGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCAAATAGAGAGCTTCAAGGACAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCCAGACTTGTCAATTGGAACCTTGTCACCAAGGGTGGAAGTGATGATGAGAAGAGGTTGAATGCCACCTACACAATCAGTGTTGCAAGAAAGCTTGGTTGCTCCATTTTTTTGTTACCTGAGGATATTATGGAGGTTAACCAGAAGATGATACTCACTCTTATAGCTAGCATAATGTATTGGAGCCTTCAACAACAGACTGAAGATCTAAATTCATTTCCTTCTCCTGCTAACACTGCAACTACCACCACACCTGAAGCATCTCCAGCACCTTCGGTTTGCGGTGAAGATGAAAATTCCTCCATCGGCGGCGAGTTCTCCAACTTAAGCGTGGATGATACCACCTCTGACAGCACAGCCTCTTCACAACCGGAGTCTGATGGCGTTGCTGCAGCAGATGAGCTTGTGAGTGGAAAGCAAGGCTCTGGGATGAAGAGGGGTAGGTCATCGTATTCCGACGGGGAAGAGGAGTACGAGTCTGACATTCAGTCAATCTCTGTGTCAAATTACCATCTTGTAGACGATGAGGACAATCCTGTGTCTTTTGCTGTGTTGCCAATTCAATGGAATGATTCTGAGAACTCTGGTGACTGCAAAGAGAAGGTGTTTCTGTACGGGGATGCCGATAGTGGGCTGTTGAAGACTTTCGTGCAAGTGACGGCGTGGCGATTTGATCTTTCCAATGTCAGACCCGAGGTATTCTTGCTGTCAAAGGATGGAAGGTGGATCAACCTTCAGAAGCCTAGAAAGAGTTTTCAAGAAGAAGTAAGGACTGTTTTGGTCACCCTTCACTTCCTCCATAGTGTGAAGAGACGGCATCAAATGTCTGTGGGATCTTTCTGGCAAGACTTCAGCAAGGATAAGGAGTTAATTTCTTACGGTGTTAAGCCCTCAAAACATGATTTATCGGACCACATGCTTTTGATTGGCGAAGCTTCCAAAAGGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCGTGGTTTTGGGGAAACTGAAGAGTCAAAAGCTTCTTAACGAGGAAGTTAATGATTTTGAACTGCCAGGACTTCCTGTTGGTGGAACTGACAGTGATATGACAGATAAATCTAATGAAGAGTCTGATGAAACGGATGCTTTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTATATGTTGTGATGGCGTGTGCATGAGATCATTTCATGCTACCGAGGAAGCTGGTAGAGAAAATTGTTGTTTTTCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCAGAACTTTTATTGTAAGAATTGTGAATATCGGCAGCACCAATGCTTTGCATGCGGCAAACTGGGGTCTTCTGATAAACTTAACAGTGTAGAGGTTTTTAAATGTACTTCTGCAACCTGTGACCGTTTTTATCATCCACGTTGTGTTGCAAAATTACTTCCCAAGGTGGTTAAGGATGCTACAGAGGAATTTGAGAGAAACATTGCTGATGGGATTCCTTTTACTTGTCCCCTTCATTATTGTTGTGTCTGTAAGGGATTGGAAAATATTATGGATCCTGAGTTGCAGTTTGCTGTTTGTAGACGTTGTCCAAAGGCATATCATCGTAGATGTTTGCCAAGAGAAATTAATTCTGAAAACAATGATATACCAAGGGCTTGGGAAGGTCTTCTACCAAAGAACCGCATTCTTATATATTGCTTAAATCATGAGATTGATCCTGAACTTGGAACTCCTGTAAGAGATCATATAAAATTCCCCGAAATGAAAGCCACTGATCAAAAAATTGATACTACTATTGAGCAGAAAAAGCCTTCAACTAAAAAGATAGTTAAGTTGAAGAAAAATATTCACTCAGATAACTCATCTGGCAAAAACACTTCTACAGGATCTAAACTGAGTGCAAAACTGTTTTCTGGCAAAGTTGGTAGCAAGAAGTCATCTGATAAGAGAATTTCTAGTTCAAATATGTCGAAAAAGCCAAACTCAAAAGAAACATCAAGGTGTTTGACTGAAAATAAGATGCCAATTTTGAAGAAATTTGAAATTCCTCACACCGAGCGAACATATAACCAGATTACAGTTGGTAAGGACGAGGGTTCGGAGCAAATTAAACAGGGCAATCAGATAAATAAAGTGAATACTAACTTCCCATCTGTCATGCCTAGTGGAGAGTTGAGGGTTGAATTGCCTCCACTGGATGCTGGTTCGGAAAAGAATTTGTTGGCTTTATTTAAAGAAGCTAGTTCATCCACTAAGTTGGAGAATGTCTTTGAAAAGCACACTCATAGTAATGCGTTGAGAAATGTTTTGGAGAAGACCATTACAACAGAGAAATTGGAAGATTCAGTTAATTCTGTTCGAACAGCTTTAAGCATGCTCAGTGGGGGCAGCATCGAGGATGCCAAAGCTGTTTGTGACCCTGATGTTTTGAAACAGATATTTAAGTGGAAGCTGGTTGGAGTATCATCTACGTTTGAGATTTTGATAGGTGAGCTTTTTATCCATGCCATGGACCAGGCATGGCAGAAGGTCATCGCAGATAAACTTCATTGGTATGTTCAGAATGGGGATACGATTGTGAACTTGAGAAGTGGTGCTGATGATTTTAGCATCCTTTTGAAGAAAAGGCTTGAGGAGACTGGGAAGAGATGTTCATACAGAAACTATGATTTACTTCCAACAAAGAATGATTTTAGTTTTGAAAGGAAGAAATGGATGACTGTCCAACAAACCGAGTTACCCACAGGGTCACAGTTGATCATTCGTCTCAGCCCTCCCTTTGGTCATAATGCAGCATTGGCTAACAAGTTTCTAGATAAGGCCCTTGAGTTTAAACCAAAGCTCCTAATTCTTACATTGGCACAAGAGATACAAAGGCTTGATAAGAAGCTATCACGTTATAATCTTATATGGGAGGATAGGAATTTTCTATCAGACACGTCAAATGATCTCCCTGGATCAGCTGATGGAAATGACGGACAAATGGATCAAAGGAATGTAAGGCCACCTGTACTCTCTCTCTGGAGCCGCTCTGACTGGACTACAAAACACAAGGTCATAGCCCAACAGAATGCTCATGTGTGCAGCGAGCATAAAGTGTCAACGACAGAAAAATTTAAGTCTAACACGTTGGCTGCTGCTGTTCATGCTACCGGTGGAAATTATGCTGAAAACTCAAAGTTAAAGGATGACGATGAATATCAAGCATCTGTAATTAGTGATGTTCAGAACGGAAGCTACAGAAGCGCATGTTATAATGTTGACGAACATAAAAAGGGCAAGCCTGAGAAGTCAGGAAAGAAGAGAAAACATATTGGCGAATCCAACCCAGCCAAAAGGCAGGCTGTAAATAAAATGGCTAATGGAGTACCTGACCACACTCAACTACCAAATCCAATCAAGAAGACAGGTTCTTCGGATTCTGAACTTCGTACATTCATTAAAAGTGGCAGTTCTGGACATAGTGGACGACCCCAACCTGGATATGGTGGTGGATTGAATGGTTTTGCTGCTGTTCCTAACTATGTATATGCGAGCCAACATTCCTGTGGTTGGCTCGAAGAGTAG 5514 0.4236 MSEVSRVTGSYANGVLPQSPMYTSPVTNTFSSPEIRRCCCSSTPSAFATPSKRRSPFASTHTIDARVFSGLSNPEWGMKKHEDGNGGVLRHTWKKRKEDNVGQVELRSLKSKVGSFHCFPVMGLLFETLKNQNGKVTFGDLPPLMVKVNAFRGMYSEDEIRGILGESGTDFTNDIDFEMFLKSYLNLQSQATAKQGGRRHSSSFLKDTVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLNPASNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRSPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELADDGEDIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCNPATLDIKDANERANMVIDHAEKMGCKRYLAPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKISYAEMITEDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWVLLEVLDKIFPGSINWKQATKPPIRMPFRKVENCNQVIEVGTQLRFSLVNVSGNDIVQGNKKLILALLWQLMRFTMLQLLRNLRSHSQGKEIRDADILKWANRKVKSTGRTSQIESFKDKSLSSGLFFLELLSAVEPRLVNWNLVTKGGSDDEKRLNATYTISVARKLGCSIFLLPEDIMEVNQKMILTLIASIMYWSLQQQTEDLNSFPSPANTATTTTPEASPAPSVCGEDENSSIGGEFSNLSVDDTTSDSTASSQPESDGVAAADELVSGKQGSGMKRGRSSYSDGEEEYESDIQSISVSNYHLVDDEDNPVSFAVLPIQWNDSENSGDCKEKVFLYGDADSGLLKTFVQVTAWRFDLSNVRPEVFLLSKDGRWINLQKPRKSFQEEVRTVLVTLHFLHSVKRRHQMSVGSFWQDFSKDKELISYGVKPSKHDLSDHMLLIGEASKRDAVLAKSKLLLVVLGKLKSQKLLNEEVNDFELPGLPVGGTDSDMTDKSNEESDETDALDVCALCDNGGNVICCDGVCMRSFHATEEAGRENCCFSLGFTQKEVDEIQNFYCKNCEYRQHQCFACGKLGSSDKLNSVEVFKCTSATCDRFYHPRCVAKLLPKVVKDATEEFERNIADGIPFTCPLHYCCVCKGLENIMDPELQFAVCRRCPKAYHRRCLPREINSENNDIPRAWEGLLPKNRILIYCLNHEIDPELGTPVRDHIKFPEMKATDQKIDTTIEQKKPSTKKIVKLKKNIHSDNSSGKNTSTGSKLSAKLFSGKVGSKKSSDKRISSSNMSKKPNSKETSRCLTENKMPILKKFEIPHTERTYNQITVGKDEGSEQIKQGNQINKVNTNFPSVMPSGELRVELPPLDAGSEKNLLALFKEASSSTKLENVFEKHTHSNALRNVLEKTITTEKLEDSVNSVRTALSMLSGGSIEDAKAVCDPDVLKQIFKWKLVGVSSTFEILIGELFIHAMDQAWQKVIADKLHWYVQNGDTIVNLRSGADDFSILLKKRLEETGKRCSYRNYDLLPTKNDFSFERKKWMTVQQTELPTGSQLIIRLSPPFGHNAALANKFLDKALEFKPKLLILTLAQEIQRLDKKLSRYNLIWEDRNFLSDTSNDLPGSADGNDGQMDQRNVRPPVLSLWSRSDWTTKHKVIAQQNAHVCSEHKVSTTEKFKSNTLAAAVHATGGNYAENSKLKDDDEYQASVISDVQNGSYRSACYNVDEHKKGKPEKSGKKRKHIGESNPAKRQAVNKMANGVPDHTQLPNPIKKTGSSDSELRTFIKSGSSGHSGRPQPGYGGGLNGFAAVPNYVYASQHSCGWLEE 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01149 1837 MobiDBLite consensus disorder prediction 726 743 - -
Vian7g01149 1837 SMART ch_5 365 464 IPR001715 GO:0005515
Vian7g01149 1837 SMART ch_5 611 715 IPR001715 GO:0005515
Vian7g01149 1837 SMART ch_5 220 333 IPR001715 GO:0005515
Vian7g01149 1837 SMART ch_5 490 592 IPR001715 GO:0005515
Vian7g01149 1837 Gene3D - 214 340 IPR036872 -
Vian7g01149 1837 ProSitePatterns Actinin-type actin-binding domain signature 2. 566 590 IPR001589 -
Vian7g01149 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1087 1176 IPR013083 -
Vian7g01149 1837 SMART PHD_3 1089 1155 IPR001965 -
Vian7g01149 1837 SMART PHD_3 1029 1084 IPR001965 -
Vian7g01149 1837 SMART PHD_3 1156 1219 IPR001965 -
Vian7g01149 1837 CDD CH_AtFIM_like_rpt4 609 717 - -
Vian7g01149 1837 FunFam Fimbrin-2 like 484 601 - -
Vian7g01149 1837 Gene3D - 602 714 IPR036872 -
Vian7g01149 1837 ProSitePatterns Actinin-type actin-binding domain signature 2. 307 331 IPR001589 -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1243 1319 - -
Vian7g01149 1837 Gene3D - 341 469 IPR036872 -
Vian7g01149 1837 ProSiteProfiles Calponin homology (CH) domain profile. 363 466 IPR001715 GO:0005515
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1268 1283 - -
Vian7g01149 1837 CDD PHD3_NSD 1171 1218 - -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 726 810 - -
Vian7g01149 1837 CDD PHD2_NSD 1089 1154 - -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1297 1318 - -
Vian7g01149 1837 SUPERFAMILY Calponin-homology domain, CH-domain 216 714 IPR036872 -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1739 1758 - -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 755 780 - -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1739 1810 - -
Vian7g01149 1837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1025 1086 IPR013083 -
Vian7g01149 1837 FunFam Fimbrin-2 like 214 340 - -
Vian7g01149 1837 PANTHER FIMBRIN/PLASTIN 97 720 IPR039959 GO:0051015|GO:0051017
Vian7g01149 1837 ProSiteProfiles Calponin homology (CH) domain profile. 488 594 IPR001715 GO:0005515
Vian7g01149 1837 FunFam Fimbrin-1 isoform A 602 714 - -
Vian7g01149 1837 CDD CH_AtFIM_like_rpt3 486 599 - -
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1243 1267 - -
Vian7g01149 1837 Pfam Calponin homology (CH) domain 612 713 IPR001715 GO:0005515
Vian7g01149 1837 Pfam Calponin homology (CH) domain 490 592 IPR001715 GO:0005515
Vian7g01149 1837 Pfam Calponin homology (CH) domain 249 332 IPR001715 GO:0005515
Vian7g01149 1837 Pfam Calponin homology (CH) domain 364 465 IPR001715 GO:0005515
Vian7g01149 1837 Pfam Cytosine specific DNA methyltransferase replication foci domain 820 926 IPR022702 -
Vian7g01149 1837 ProSiteProfiles Calponin homology (CH) domain profile. 609 717 IPR001715 GO:0005515
Vian7g01149 1837 MobiDBLite consensus disorder prediction 1780 1805 - -
Vian7g01149 1837 ProSiteProfiles Calponin homology (CH) domain profile. 218 335 IPR001715 GO:0005515
Vian7g01149 1837 Gene3D - 484 601 IPR036872 -
Vian7g01149 1837 FunFam Fimbrin-2 isoform A 341 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01149 Vian-Chr7 19770462 19792281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01149 86 787 EF-hand Containing Proteins AT5G55400 65.363 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01149 K17275 - gmx:100806429 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01149 7 19770462 19792281 Vian7g01149 7 19770462 19792281 ECH
Vian6g00424 6 18064908 18086295 Vian7g01149 7 19770462 19792281 PCT