Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01132 ATGCAAATGTCTCAGAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGCCATGCAACCTACCCTTCTGTTCGTACTTTAGAGCAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTCGATATGTATGATACTGTAATTCCGGAGGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTTTATGAAATCAGCCCATATCTCAAATTTGGTTACATGTCTGCAAATGGAGCTATTGCTGAAGTCGTGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATAAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTCGCACAATCATATAATGTACCCTTTGAGTTCCGTGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTCAGAACCATCGTGGCCGGTTGTTGAGACTCGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCTATTTTCGAATCAATTGATGTTGCTCTTCCAAGGGAGAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCTCTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGA 1617 0.4286 MQMSQKHNMSYEAVQNLGSCCFLQSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTKNSFPSLNSPTTVSFSPNHSPLSKLQPKSYVLSSHSSLEITNDSIENESCLTHNDNELRHKIRELESAMLGHDADILDMYDTVIPEESDSFLLEAERWKKMMEMISRGDLKEMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEISPYLKFGYMSANGAIAEVVKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPKIRITGFDDSTSAYAREGGLEIVGERLSALAQSYNVPFEFRALEVAPTEVEIKDLELRPGEAIAVNFAMMLHHLPDESVDGQNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENKERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGHYTLEERDGALCLGWMNQALITSCAWR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01132 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Vian7g01132 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 532 IPR005202 -
Vian7g01132 538 Pfam GRAS domain family 169 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01132 Vian-Chr7 19531037 19532653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01132 44 538 GRAS Transcription Factor Family AT1G50600 59.281 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian7g01132 GRAS 5.7e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01132 - - gmx:100779977 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01132 7 19531037 19532653 Vian7g01132 7 19531037 19532653 ECH
Vian6g00451 6 18849637 18851277 Vian7g01132 7 19531037 19532653 PCT