Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01125 ATGGCTTATCCGGATTCTTCCACCTTCTGTTGCTCATCGCGGTTTCACTGTCATGGGTTTGGAAGAAACTCACAACACGTATCAGGGATGATTCGGAGGAGAAACACGACAACATCCTCTTCGAAACATGACTTACCCTCTGATGTTGTAGAGAAGCTTCCCCGGGGAAGTTCTGATACAGCAATTGAACTAGTTGATGGAAACTTTTCTTGGGAATTATCTAACCCAACACTGCAAAATATAAATCTTAAAGTTTTTAATGGGATGAAGGTTGCAGTTTGTGGCACTGTTGGATCAGGCAAATCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCTAAAATATCAGGCATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTACTCAATGTCCATGGATACAAAGTGGCAAGGTTGAGGATAATATATTGTTTGGTAAACAAATGGATAGGGAAAAATACGAGAAGGTACTTGAAGCGTGTTCCCTGAAGAAGGATCTGGAGATTTTGCCATTTGGTGATCAGACAATCATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATCGCACGTGCACTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTCAGTGCTGTGGATGCTCACACGGGCTCTCACCTCTTCAAGGAATGCTTGTTAGGCCTTTTAAGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTCGAGTTCTTACCTGCTGCTGACCATATATTGGTTATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACTGATTTGCTTAGTTATGGAACTGATTTTATGGAACTTGTTGGTGCACACAAAAAAGCTCTGTCTACTCTAGATTCATTGGATGGAGAAAATGTATCTAATGAAATAAGCACCTTGGAACAAGATGTAAATGTCTTTGGCACGCAAGGTTCTAAAGAAGAGGAGGCAAGTAAAGATAGACAAAATGGCAAAACAAACGAAAGTGAACAAAAAGGTCAGTTTATTCAGAAAGAAGAAAGGGTGAAAGGTAAAGTTAGCTTTTCAGTTTATTGGAAATGTATCACAACAGCATATGGAGGAGCTCTTGTACCATTTATATTGTTAGCTCAGATTCTTTTTCAAGTTCTTCAAGTTGGCAGCAATTATTGGATGGCTTGGGCGACTCCCGTCTCAACAAATGTGGAACCACCTGTTGAAGGAATAACTCTTATAGTAGTTTATGTTAGTTTGGCTATTGGAAGTTCATCATGCATCCTTGCCAGATCAATGCTTCTTGTCACAACTGGTTATAAAACAGCTACCATACTCTTCACTAAAATGCACTATTGCATTTTCCGTGCTCCAATGTCATTTTTTGATTCCACTCCAAGTGGGCGAATCCTTAACAGAGTTTCAACTGATCAAAATTCATTGGATACAAACATTCCTCGTCAAATTGCATCATTTTCCTTCATTATGATCCAACTTCTAGGAATTATAGCAGTGATGTCTCAGGCCGCATGGCAGGTTTTCGTTGTCTTTATACCTGTGATTATAGTCAGCATTTGCTATCAGCAATATTATATTCCATCAGCCAGAGAACTATCACGTTTAGTTGGAGTCTTCAAATCCCCACTCATACAACACTTTTCTGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAACAAATATGACACTGAGTGATGGGTATTCTCGGCCAAAGTTCAACATTGCCGGTGCCATGGAATGGTTGTGCTTCCGCTTAGATATGCTGTCTTCTATTATATTTGCCTTTTCCTTAATATTCATAATATCAGTTCCACCGGGATTCATAGATCCAGGCCTTGCTGGTTTAGCGGTTACATATGGGCTAAATTTGAACAATATACAAGCTTTGATGATATGGAATCTATGCAAAATGGAGAGCAAAATTATATCAGTAGAGAGAATACTTCAGTATACTTGTATTCCTAGTGAGCCTCCCCTTGTTATAGATGAAAATCAGCCAGATTCTTCTTGGCCCTCAAATGGCGAGGTTGATATACAAAATTTGAAGGTTCGCCATGCTCCACATCTTCCACTTGTGTTGTGTGGTCTTACGTGCAAATTTCATGGAGGACTGAAAACTGGTATTGTTGGGAGAACAGGAAGTGGTAAATCCACACTTATACAAACGCTTTTCCGAATTATTGAGCCTGCTGTTGGAAAAGTTATGATTGACAACATCAACATCTGTTCCATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTAAGAAATAATATGGACCCCCTGGAAGAACACACTGATGAAGAGATTTGGGAGGCCTTGGATAAGAGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCAAAGTTAGTGCGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGTTGGTCTGCCTTGGCAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTCGATACAGCAACGGATAATTTGATTCAGCAAACTCTCAGGCAACATTTCGCTGACTCCACAGTTATTACCATTGCACACCGAATAACTTCAGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGACATTGGTGCAGGACTTATTGAGGAGTATGACACCCCAACAAAATTGCTAGAGAATAAGTCTTCATCTTTTGCTCAACTTGTTGCTGAGTATACCACGAGGTCCAAGTTCAGTTTTGAGGAATCTGATGATCACTGA 2832 0.3969 MAYPDSSTFCCSSRFHCHGFGRNSQHVSGMIRRRNTTTSSSKHDLPSDVVEKLPRGSSDTAIELVDGNFSWELSNPTLQNINLKVFNGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVTQCPWIQSGKVEDNILFGKQMDREKYEKVLEACSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADHILVMKDGKITQCGKYTDLLSYGTDFMELVGAHKKALSTLDSLDGENVSNEISTLEQDVNVFGTQGSKEEEASKDRQNGKTNESEQKGQFIQKEERVKGKVSFSVYWKCITTAYGGALVPFILLAQILFQVLQVGSNYWMAWATPVSTNVEPPVEGITLIVVYVSLAIGSSSCILARSMLLVTTGYKTATILFTKMHYCIFRAPMSFFDSTPSGRILNRVSTDQNSLDTNIPRQIASFSFIMIQLLGIIAVMSQAAWQVFVVFIPVIIVSICYQQYYIPSARELSRLVGVFKSPLIQHFSETISGTSTIRSFDQQSRFQETNMTLSDGYSRPKFNIAGAMEWLCFRLDMLSSIIFAFSLIFIISVPPGFIDPGLAGLAVTYGLNLNNIQALMIWNLCKMESKIISVERILQYTCIPSEPPLVIDENQPDSSWPSNGEVDIQNLKVRHAPHLPLVLCGLTCKFHGGLKTGIVGRTGSGKSTLIQTLFRIIEPAVGKVMIDNINICSIGLHDLRSRLSIIPQDPTMFEGTVRNNMDPLEEHTDEEIWEALDKSQLGDEVRKKEGKLDSKVSANGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFADSTVITIAHRITSVLDSDMVLLLSQDIGAGLIEEYDTPTKLLENKSSSFAQLVAEYTTRSKFSFEESDDH 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01125 943 SUPERFAMILY ABC transporter transmembrane region 370 671 IPR036640 GO:0005524|GO:0016020
Vian7g01125 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 282 IPR027417 -
Vian7g01125 943 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
Vian7g01125 943 CDD ABC_6TM_ABCC_D2 370 664 IPR044726 GO:0140359
Vian7g01125 943 FunFam ABC transporter C family member 3 672 928 - -
Vian7g01125 943 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 689 927 IPR003439 GO:0005524
Vian7g01125 943 Pfam ABC transporter 78 212 IPR003439 GO:0005524
Vian7g01125 943 MobiDBLite consensus disorder prediction 319 340 - -
Vian7g01125 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 922 IPR027417 -
Vian7g01125 943 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 283 IPR003439 GO:0005524
Vian7g01125 943 Pfam ABC transporter transmembrane region 372 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian7g01125 943 Pfam ABC transporter 709 854 IPR003439 GO:0005524
Vian7g01125 943 Gene3D - 672 929 IPR027417 -
Vian7g01125 943 CDD ABCC_MRP_domain2 687 911 - -
Vian7g01125 943 Gene3D - 34 302 IPR027417 -
Vian7g01125 943 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 372 652 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian7g01125 943 MobiDBLite consensus disorder prediction 315 340 - -
Vian7g01125 943 CDD ABCC_MRP_domain1 62 260 - -
Vian7g01125 943 FunFam ABC transporter C family member 5 47 292 - -
Vian7g01125 943 Gene3D ABC transporter type 1, transmembrane domain 332 670 IPR036640 GO:0005524|GO:0016020
Vian7g01125 943 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 928 - -
Vian7g01125 943 SMART AAA_5 715 906 IPR003593 GO:0016887
Vian7g01125 943 SMART AAA_5 87 260 IPR003593 GO:0016887
Vian7g01125 943 FunFam ABC transporter C family member 5 333 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01125 Vian-Chr7 19428372 19432394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01125 687 926 Calmodulin-binding Proteins AT2G36910 27.869 1.38e-25 112